Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq383 93.3 4e-14 seq565 91.5 1e-13 >seq383 Length=330124 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | |||||| ||||| || || |||||||| || || || || | | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | || ||||||||||||||| | ||||||| ||||| ||||| || Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAG-ACGCTATGGTATCGGTAGACTCCGT 48678 | | ||| ||||| |||||| ||||| | | | | || ||||| | | || Sbjct 43830 ATGCCTTCTTTGTCTTGAATTTT-TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||||||||| || | |||||| ||||| |||||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || |||||||| | |||| |||||||| ||||||||||||| |||| || | || Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 150482 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 |||| ||| || || || ||||||||||||| || || || | || ||||||||| Sbjct 150483 TCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150542 Query 48635 ATAATTTTCTGCTTGATAGACG----CTATGGTATCGGTAGACTCCGTCTCGACTGTTAT 48690 ||||| ||||| | ||| | || ||||| | | || || | || || Sbjct 150543 TGGATTTT-TGCTTTA---ACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGAT 150598 Query 48691 GGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||| || || | |||||| ||||| || ||||| Sbjct 150599 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238904072395