Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq1006 210 1e-49 seq1188 82.4 5e-11 seq1064 82.4 5e-11 >seq1006 Length=36943 Score = 210 bits (232), Expect = 1e-49 Identities = 486/727 (67%), Gaps = 14/727 (2%) Strand=Plus/Plus Query 71910 TCCGATCTCATCATTGTCGCCGCCCGCCCATCTATGGGGAAGACCACGTTTGCGATGAAT 71969 || ||||| |||||| | || || || || || |||||||| || || ||||| || ||| Sbjct 9133 TCAGATCTTATCATTATTGCTGCGCGACCTTCAATGGGGAAAACAACTTTTGCTATAAAT 9192 Query 71970 CTCGTCGAAAATGCCGCAGTTCGTAACGATAAGCCCGTATTGGTTTTTAGCCTTGAGATG 72029 | ||| |||| ||| | | | || || || || || ||||||| | || ||| Sbjct 9193 TTGTGTGAATATGCAGCAATAAATGAAGAAAAACCAGTTTTAATTTTTAGTTTAGAAATG 9252 Query 72030 CCGAGCCACCAGCTGATGATGCGCTCACTGGCTTCTCTTGCACGCGTTGATCAGACTCGT 72089 || || | || | ||||| || ||| ||||||| || | || ||||| | |||| Sbjct 9253 CCAGGCGAACAAATTATGATACGAATACTTTCTTCTCTATCAAGAGTCGATCAAAGTCGT 9312 Query 72090 ATTCGGACAGGGCAACTTAACGACGAGGATTGGGCGCGGGTTTCTGGCGCAATGGGTATT 72149 | | || || || | | | || |||||| | || | || || | | ||| Sbjct 9313 TTAAGAACTGGTCAGTTGACAAAAGAAGATTGGTCACGTATATCACATACAGTAGAGATT 9372 Query 72150 CTGTTGGACAAGCAGAATATTTTTATTGATGACTC----AAGCGCCCTGACGCCGACAGA 72205 | | | || ||||||||| ||||||||| || |||| | || | ||||| Sbjct 9373 TTACTAAAAAAAAAGAATATTTATATTGATGATTCTTCTAAGC----TAACAGCAACAGA 9428 Query 72206 GCTACGTTCCCGCGCTCGTCGTGTTTATAAAGAAAATGGTGGTTTGAGCATGATTATGAT 72265 | || || | | | | ||| ||| ||| ||||| || | |||||||| Sbjct 9429 AATTCGATCTAGATCAAGAAGAATTTTCCGTGAACATGAAGGTTTAAGTTTAATTATGAT 9488 Query 72266 CGACTACCTGCAACTTATGC--GCGTCCCCGAGCTGCAAGATAACCGAACGCTGGAAATT 72323 || || || |||||||||| ||| | ||| | || ||| |||| | |||||| Sbjct 9489 AGATTATCTTCAACTTATGCATGCGCCTACGATATTTAA--TAATAGAACTTTAGAAATT 9546 Query 72324 GCCGAGATTTCTCGCTCACTGAAGGCGTTGGCGAAGGAATTACAAGTACCGGTGGTGGCA 72383 || || ||||| | || | || || ||||| || ||| | ||||| || || | || Sbjct 9547 GCAGAAATTTCAAGATCTTTAAAAGCCTTGGCAAAAGAACTTCAAGTTCCAGTTATTGCT 9606 Query 72384 TTGTCACAACTTAATCGATCGCTT-GAACAGCGTGCGGACAAACGACCGGTAAATTCAGA 72442 ||||| || |||||||| | | || ||||| | | || ||| |||| ||||||||||| Sbjct 9607 TTGTCGCAGCTTAATCG-TAGTTTAGAACAAAGATCTGATAAAAGACCAGTAAATTCAGA 9665 Query 72443 TTTACGTGAATCAGGAGCAATTGAGCAGGACGCAGACCTGATTATGTTTCTGTATCGCGA 72502 |||| | ||||| ||| |||| ||||| || ||||| | ||||||||| | ||||| || Sbjct 9666 TTTAAGAGAATCTGGATCAATCGAGCAAGATGCAGATGTTATTATGTTTATCTATCGTGA 9725 Query 72503 CGAAGTTTATCACCCGGATAGCGAAATGAAGGGCATTGCCGAGGTAATTATCGGAAAGCA 72562 |||||||||||| |||| || | || || || || || | ||| | ||||| || Sbjct 9726 CGAAGTTTATCATGAAAATAGTGAGACAAAAGGGATAGCAGAAATTATTTTAGGAAAACA 9785 Query 72563 ACGAAATGGCCCAATTGGCACGGTGAGATTGGCTTTTAACGGCCAATACTCACGGTTTGA 72622 ||| || || ||||| || || | | | ||||||| || ||| || | ||||| Sbjct 9786 ACGTAACGGACCAATCGGAACAATTCGTCTAACTTTTAATGGAAAATGGTCTAGATTTGA 9845 Query 72623 TAACTAT 72629 ||| ||| Sbjct 9846 TAATTAT 9852 Score = 95.1 bits (104), Expect = 7e-15 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 21171 TGGCGCGACAAGCAAACGGGCCAACAGAAAGAGCAAACAGAATGGCATAAAGTCGTTTTG 21230 |||||||| || | || || || ||||| |||| |||||||| | ||| ||| | Sbjct 10082 TGGCGCGATAAAAATACCGGAGAAATCAAAGAAAAAACCGAATGGCACAGAGTAGTTATT 10141 Query 21231 TTCGGAAAACTTGCTGAAATTGCGAGTGAGTATTTACGAAAAGGTTCTCAGGTCTACATC 21290 || |||||| | |||||||| || | || |||||||||||||| ||||| || || ||| Sbjct 10142 TTTGGAAAATTAGCTGAAATAGCCGGAGAATATTTACGAAAAGGATCTCAAGTATATATC 10201 Query 21291 GAAGGGA 21297 ||||||| Sbjct 10202 GAAGGGA 10208 >seq1188 Length=10746 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||| ||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 9236 GGCCCTTTAGCTCAGAGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 9295 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 9296 CCAGCAAGGGCCA 9308 >seq1064 Length=27237 Score = 82.4 bits (90), Expect = 5e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 70933 GGCCCTTTAGCTCAGTGGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAAGT 70992 ||||||||||||||| ||| ||||| |||||||||||||||| |||| | ||||||| | Sbjct 26737 GGCCCTTTAGCTCAGAGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 26796 Query 70993 CCGGTAGGGGCCA 71005 || | | |||||| Sbjct 26797 CCAGCAAGGGCCA 26809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303226348848795