Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq35 149 7e-31 seq47 136 5e-27 seq477 87.8 2e-12 seq1001 84.2 3e-11 >seq35 Length=1460975 Score = 149 bits (164), Expect = 7e-31 Identities = 222/312 (71%), Gaps = 6/312 (2%) Strand=Plus/Minus Query 164393 ATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCA 164452 ||||| |||||| ||||||| | || || | ||| |||||| | ||||||| Sbjct 1138051 ATTGGGATTTTGGCAAAATGGGTATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCC 1137992 Query 164453 GACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAAC 164512 | || || ||||| || ||| ||||| |||| | | || | | || || |||| Sbjct 1137991 GTCGTGCTTTTGCCTCAAGAGTCTTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAAC 1137932 Query 164513 ATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGAT 164572 || | ||||| ||||| || |||||||||||||| ||| ||||| ||||||||||| Sbjct 1137931 ATGTCAAAGGTATTTTGTTGTATGGACCTCCTGGTACCGGCAAAACCTTAATGGCTCGCC 1137872 Query 164573 GCATTGCTCAAGCTTTTAAAT---CGCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | ||| | || ||| || || ||| |||||||| |||||||| || ||| Sbjct 1137871 AAATAG-GCAATATGTTGAATGCCCGTGAGCCG--AAAATTGTAAATGGTCCGCAAGTAT 1137815 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | | |||||||| || ||||| ||||||||| | ||| ||||||| || ||||| | Sbjct 1137814 TAGATAAATATGTCGGCGAGTCCGAAGCTAATATAAGACGGTTGTTTGCCGAAGCTGAGG 1137755 Query 164690 AAGAACAAAAGA 164701 |||| |||||| Sbjct 1137754 AAGAGGAAAAGA 1137743 Score = 132 bits (146), Expect = 6e-26 Identities = 266/394 (68%), Gaps = 18/394 (5%) Strand=Plus/Minus Query 164723 TACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGT---------G 164773 ||||| | ||| |||| ||||| || ||||| |||||||| |||||| | Sbjct 1137665 TACATATAATTATTTTCGATGAAATTGATGCCATTTGCAAAGCTCGTGGTTCAGTAGCGG 1137606 Query 164774 ATAATATTA---TTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAG 164830 ||| | | ||||| | || |||||||| ||| | ||||||| || || || | Sbjct 1137605 GTAACAGCGGAGTCCATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGG 1137546 Query 164831 AATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 | || |||||||||||| || | ||||||||||| || | ||| | |||||||| | Sbjct 1137545 AGCAATTGAATAATATTTTAGTTATTGGTATGACCAATCGCCGTGACATGATTGATGAGG 1137486 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 ||||| |||| ||||| || || ||| || |||| ||||| | || || || ||| | Sbjct 1137485 CTTTACTACGCCCTGGCCGTTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTG 1137426 Query 164951 GACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAA---ATGAAATCCTGTGATATATTAT 165007 || | | |||||| |||| |||| | ||| ||| | | ||| | | Sbjct 1137425 GAAGAGTACAAATTCTAAATATTCA---CACGAAACGTATGCGCGATTTTAATAAAATTG 1137369 Query 165008 CTCCCGATGTAGATTTAAATAAAATAGCTGCCGAAACTAAAAATTATAGTGGTGCTGAAT 165067 || ||||| ||| || |||| |||||| || ||||||| || || ||||||| Sbjct 1137368 CTGGAGATGTGGATACGAAAGAAATCGCTGCCCTTACCAAAAATTTCAGCGGCGCTGAAT 1137309 Query 165068 TAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 | || || |||||| | || || ||||| || || Sbjct 1137308 TGGAAGGCTTAGTACGTGCTGCCCAATCTACTGC 1137275 >seq47 Length=1194842 Score = 136 bits (150), Expect = 5e-27 Identities = 300/445 (67%), Gaps = 16/445 (4%) Strand=Plus/Minus Query 6802 CGAGTTAATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGC 6861 || |||||||| || |||| | || ||||| | ||||| || | ||| || Sbjct 1117576 CGTGTTAATTGCTCCTTTAATGGTTGGATATGCGTTTTGTAAATGTGCGTATCACCGGTA 1117517 Query 6862 GTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAAT 6921 || || ||||| || |||||||| | | || ||||| | | | ||||||||| Sbjct 1117516 GTGTGTATAAACTCGCCTGGTTTAAGGCCGGTTAAATGGGCAATCATACACGTTAATAAT 1117457 Query 6922 GCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACAT 6981 ||||| || |||| |||||| || ||||| | |||||||| || | |||||| | Sbjct 1117456 GCATACGATGCTATATTAAATGGGACACCCAGCCCCATATCGGCACTGCGCTGATAAAGT 1117397 Query 6982 TGACAAGATAA---AATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGT 7038 ||||| || || | ||||| || |||| ||||| ||| ||| || || ||| Sbjct 1117396 TGACATGACAACTCATTATTGGATA---CATAGAATTGGGCCAAGCAATGGCAGGGCGGT 1117340 Query 7039 AAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTT 7098 || | | |||||| ||||||||||| | || | ||||||| ||| | Sbjct 1117339 AAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGACAAAATCATACGTCGATCTGTG 1117280 Query 7099 GGATTTGTTTTTAATTTTGTTATAATTATTTGT---AATTGATCTATACCCTGACCTT-- 7153 |||||||| ||| |||| ||||||| ||| |||||||| | |||| || | Sbjct 1117279 GGATTTGTAGTTA---TTGTCCTAATTATCTGTTTCAATTGATCGACTCCCT--CCGTAC 1117225 Query 7154 CATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAA 7213 |||| || ||||| | ||| | || |||||||| | ||||||||| || |||| Sbjct 1117224 CATAGCTATCGCGACAAGTGCGATATTGTGCCCCAAAATGGCGCCATTGAAAACCGTAAA 1117165 Query 7214 TAGGACCTAAATCACCTTCTTCACG 7238 | || || || |||||||||||||| Sbjct 1117164 TTGGCCCCAAGTCACCTTCTTCACG 1117140 >seq477 Length=240241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 187/279 (67%), Gaps = 3/279 (1%) Strand=Plus/Minus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||||||||| |||||||| || | || ||| ||||| || | | | |||| Sbjct 223970 ATAAATATGGCAATCTCCTAATGTGTAAACAAAATCACCAACTTCTAATCCTGAAACTTG 223911 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 |||||||||| ||||| || | |||| || | ||||||||| |||||||| | Sbjct 223910 CGCAATTAAATGAGTTAACAACGAATAACTTGCAATATTAAAAGGAACACCTAAAAAAAC 223851 Query 6960 ATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTCTATAG---CATAAAATTG 7016 ||| || | |||||| |||||||| ||| |||| ||| | | |||||||||| Sbjct 223850 ATCAGCACTACGTTGATACAATTGACAACTTAATTTATTATCTTTTGAAACATAAAATTG 223791 Query 7017 ACACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGT 7076 || ||||||||| || || | | || || |||| ||||||||||||| | Sbjct 223790 CATTAAAGTATGACATGGCGGCAACGCCATTTTTTCAATTTCAGCTGGATTCCAAGCACT 223731 Query 7077 CATTAAAATACGTCTATCATTTGGATTTGTTTTTAATTT 7115 | | | || | || |||||| |||||||| || Sbjct 223730 AACAATATGGCGACGTGAATATGGATTAGTTTTTAAATT 223692 >seq1001 Length=38010 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 6825 TTTTATATGAT--CTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGT 6882 ||||||||||| ||| |||||| | |||||||| || ||| ||||| || | Sbjct 6580 TTTTATATGATTACTATATAAAT--GCACATCTCCTCCTGTCCAAATTAATTCTCCAACT 6637 Query 6883 TTCATATCA-ACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAA 6941 | | || | ||| | |||| | || |||||||| |||||| ||| | |||||| Sbjct 6638 TGTAATTCGCATTGCT-GTGCAAACATATGCGTTAATAAAGCATAACTAGCAAGATTAAA 6696 Query 6942 AGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAGATAAAATATTGTC 7001 ||||| || | ||||| |||||||||||| |||||| ||||| | | | Sbjct 6697 AGGTAATCCAAGAAAAATATCGCATGATCTTTGATATACTTGACATGATAAGGTTTGATT 6756 Query 7002 TATAGCATAAAATTGACACAATACATGACATGGAGG 7037 || | ||||||||||| | |||| |||||| ||||| Sbjct 6757 TACAACATAAAATTGAAATAATATATGACACGGAGG 6792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595854161082000