Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq114 113 2e-20 seq201 109 3e-19 seq3 109 3e-19 seq144 102 4e-17 seq167 100 1e-16 >seq114 Length=734348 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 593282 ATTGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 593223 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 593222 ACTGAGCTAATGGGCC 593207 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 587214 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 587155 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 587154 TGAGCTAATGGGCC 587141 >seq201 Length=519459 Score = 109 bits (120), Expect = 3e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 420734 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 420675 Query 11516 TGAGCTAATGGGCCGTCGA 11534 |||||||||||||| |||| Sbjct 420674 TGAGCTAATGGGCC-TCGA 420657 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 423587 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 423528 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 423527 TGAGCTAATGGGCC 423514 >seq3 Length=2711279 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1586078 TGGCCCATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1586019 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1586018 TGAGCTAATGGGCC 1586005 >seq144 Length=602166 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 212475 TTGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 212534 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 212535 CTGAGCTAATAGGCC 212549 >seq167 Length=579703 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 83959 TGGCCTATGGGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 83900 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 83899 TGAGCTAATAGGCC 83886 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483567317020