Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq383 152 5e-32 seq565 136 4e-27 seq161 125 6e-24 >seq383 Length=330124 Score = 152 bits (168), Expect = 5e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 || |||||||| || | |||||||||||||| | ||||| || || ||| | | Sbjct 43938 CGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCA 43879 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||||||| || ||| |||| ||||| | || |||||||||||||| ||||||||| Sbjct 43878 TCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTG 43819 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||||||||| || ||| | | ||| || | | | || || || | |||||| Sbjct 43818 TCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATG 43759 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || | |||||| |||||||||||||||| Sbjct 43758 GTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATGC 43722 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || | ||| |||| || || |||||||| || || || || | ||||||||| Sbjct 43722 CCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 43663 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||| || ||||| |||| ||||| | ||||||||||| || Sbjct 43662 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 43603 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | |||||| || || || | | |||||||| | || || Sbjct 43602 ATTCCTTCCTTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACC 43543 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| ||||| ||||| | || ||||| ||||||||||| Sbjct 43542 TCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq565 Length=193464 Score = 136 bits (150), Expect = 4e-27 Identities = 181/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || ||| || | | ||||| ||||| ||||| || ||||| | Sbjct 150616 TTTTAACAAATATTTGCATTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTT 150675 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | ||| ||||| || ||| | || |||| ||||||||| ||||||| | Sbjct 150676 TCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCA 150735 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | || || ||||||||||||||||| ||||| | |||||||| || ||| ||| Sbjct 150736 AACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGA 150795 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | || || || | ||||||||||||||||| | |||||| ||||| | Sbjct 150796 TAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATA 150855 Query 95001 TCTGCATGC 95009 | ||||||| Sbjct 150856 TTTGCATGC 150864 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 94794 GCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAAT 94853 |||| || || ||||| || ||||||||||| | ||| ||||| || ||| | || Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 94854 CCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGT 94913 | |||| |||||| || | || ||||| | || || ||||||||||||||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 94914 CATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGG 94973 | | |||||||| || ||| ||| ||| || | | || || || | ||||||| Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 94974 TTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||| | |||||| ||||| || ||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | ||||||||| || ||| || ||| Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || || ||| |||| || || | |||||| ||||||||||||||||| ||||| | | Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 159498 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || || || ||| ||| || | | || || || | ||||| ||||| Sbjct 159499 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 159558 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| | ||||| || ||||| ||||| Sbjct 159559 CCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | ||||||||||||||| | ||| ||||| || ||| | | Sbjct 145778 CGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA 145837 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| ||||| || | || ||||| | || || ||||||||||||||||| ||| Sbjct 145838 TCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTG 145897 Query 94913 TCATAAATTTTTGCCTTGACG 94933 || | |||||||| || ||| Sbjct 145898 TCTTGGATTTTTGCTTTAACG 145918 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| ||||| || || ||||| || | || |||||| || ||| || ||| Sbjct 158923 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 158982 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || ||||||| || | ||| |||||||| || || ||||| || || | | Sbjct 158983 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159042 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | || || | | ||||| || | ||||||||||| Sbjct 159043 ATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTA 159102 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| | ||||| || || || ||||||| Sbjct 159103 CCAGTCAATGTTTTGACGAAAATTTGCATGC 159133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 169/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 94764 TTTTAA--AAT-TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || || || | ||| || || ||||| || | || ||||| | Sbjct 150844 TTTTAACAAATATTTGCATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTT 150903 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTA 94880 | || | ||| || || | ||| | || |||| |||||| || ||||||| | Sbjct 150904 TCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCA 150963 Query 94881 ATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGA 94940 | | ||| |||||||| || | ||| ||||| || | |||||| | || || | | Sbjct 150964 AACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAA 151023 Query 94941 CAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGA 95000 ||| || | | || || || | ||||| ||||||||||| | || ||||| |||| Sbjct 151024 TAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGA 151083 Query 95001 TCTGCAT 95007 ||||||| Sbjct 151084 TCTGCAT 151090 >seq161 Length=579164 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||||||||| || || |||||||| | ||||||||| | ||| ||| ||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||||| || | || || || | ||| |||||||||||||| |||||||| || | | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 ||||| |||||||| | | |||||| | | || || || | || || ||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||||||||| ||||| || ||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277779282200