Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq249 111 3e-20 seq850 96.9 7e-16 seq1029 95.1 2e-15 seq283 93.3 8e-15 seq426 89.7 1e-13 seq288 89.7 1e-13 >seq249 Length=464971 Score = 111 bits (122), Expect = 3e-20 Identities = 285/430 (66%), Gaps = 7/430 (2%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| ||||||||||||||| || | || | | Sbjct 382178 ACATGATCATTGTATATATGCCTCACATTCATTTCATCTTGCTTAAATATTACTATCATA 382119 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| ||||| || | ||| ||| Sbjct 382118 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGGCATAAATAAAAG 382059 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || || | |||||||| || || | || || ||||| || Sbjct 382058 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 381999 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || ||||| || | || | || || || ||| ||||| |||| Sbjct 381998 CATATCACATCATCGAATATTATTATTGAATGTGGTTTCGC--CTTAGACAGGC-TGATA 381942 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| ||| |||||| || || || || | || | | | |||||| Sbjct 381941 ACTTTTTCATTTTCTGAGAATGTAAATAAGTTTATGCCCTTTATTGGATCGATGAGTGTC 381882 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| ||||| || | || || || | ||| Sbjct 381881 TGCAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAAT 381822 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 |||| || || ||| | | || || | || | | || ||||| ||||| |||||| Sbjct 381821 TTCAATCCATTAGGACTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGAT 381762 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 381761 GGACCCACAA 381752 >seq850 Length=77471 Score = 96.9 bits (106), Expect = 7e-16 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 7287 ATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAGTT 7346 |||||||| || |||||| ||| ||||||||||||||| || | || | | | Sbjct 5815 ATGATCATTGTATATATGCCTCACATTCATTTCATCTTGTTTAAATATTACTATCATATA 5874 Query 7347 TGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAGCT 7406 ||||||||| | || | || ||||| |||| ||||| |||||||| | ||| |||| Sbjct 5875 TGCATTATCACGTATTAAATGTTTGGGGATTCTCGTATATGTTTGACATAAATAAAAGCA 5934 Query 7407 GTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCACA 7466 |||| || || |||| ||||||||| || || | || || ||||| || || Sbjct 5935 ATCAATATGTTTATGTCTACCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCGCA 5994 Query 7467 AGCAACATCGTCAAATATCAT 7487 ||||| ||||||||||| Sbjct 5995 TATTACATCATCAAATATCAT 6015 >seq1029 Length=40908 Score = 95.1 bits (104), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || ||||| ||| |||| |||||||||| ||| | || | | Sbjct 5751 ACATGATCATTGTATATATGTCTCATATTCGTTTCATCTTGTTTGAATATTACTATCATA 5692 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||||| |||| || || || |||| |||| ||||| || | ||| ||| Sbjct 5691 TTTGCATTATCTCGTATCAAATGGTTAGGAATTCTCATATATGTTTGTCATAAATAAAAG 5632 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAA-AAAAGCTTTGATGTGATCCTGTTTTTC 7463 | |||| | ||||||| ||||||||| || || | ||| || || ||||| | Sbjct 5631 CAATCAATGTGTTTGTGTCTACCCATGCAAAAGTAATTCCTTGTAGT-ATTTTGTTTATT 5573 Query 7464 ACAAGCAACATCGTCAAATATCAT 7487 ||| ||||| || |||||||| Sbjct 5572 ACATATCACATCATCGAATATCAT 5549 >seq283 Length=462826 Score = 93.3 bits (102), Expect = 8e-15 Identities = 281/430 (65%), Gaps = 12/430 (3%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 |||||||||| || |||||| ||| |||||||||| |||| |||| || | | Sbjct 6354 ACATGATCATTGTATATATGCCTCACATTCATTTCACCTTGCTTAAACATTACTATCATA 6413 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || ||||| |||| ||||| |||||||| | ||| ||| Sbjct 6414 TTTGCATTATCACGTATTAAATGTTTGGGAATTCTCGTATATGTTTGACATAAATAAAAG 6473 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || || | |||||||| || || | || || ||||| ||| Sbjct 6474 CAATCAATGTGTTTATGCCTGCCCATGCAAAAGTAATTCCTTATAGTATTTTGTTTATCA 6533 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAGCATCTT---CAGGCTTGATT 7521 || ||||| || | ||| || | || | || || || ||| |||||| || Sbjct 6534 CATATCACATCATCGATTATTATTATTGAATGTGGTTTCGC--CTTAGATAGGCTT-ATA 6590 Query 7522 ACAGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTC 7581 || ||||| || |||||| || ||| || | || | | | ||||| | Sbjct 6591 ACTTTTTCATTTTTTGAGAATGTAAA-----TAATGCCCTTTATTGGATCGATCAGTGCC 6645 Query 7582 TCCAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAAC 7641 | ||| | |||| |||||||| | | ||| ||||| || | || || || | ||| Sbjct 6646 TGCAGATAACGATATTTTGGTTGATATAAAGATTTTGAATATATGTAGATGTTTTTAAAT 6705 Query 7642 CTCAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGAT 7701 | | || || ||| | | || || | || | | || ||||| ||||| |||||| Sbjct 6706 TTGAGTCCATTAGGACTTTCTATTAGGCTAATCATAACGTTTGTCTTGCCACAATTTGAT 6765 Query 7702 GG-CCCGCAA 7710 || ||| ||| Sbjct 6766 GGACCCACAA 6775 >seq426 Length=278237 Score = 89.7 bits (98), Expect = 1e-13 Identities = 275/422 (65%), Gaps = 5/422 (1%) Strand=Plus/Minus Query 5308 TAAACTCTCGCCACATT-TTCGTCTTAAGTGTTCTATTGAAACGTTCACATATGGATGCT 5366 |||||||| |||||| ||| | |||| |||||||||||| |||||| | |||| || Sbjct 102567 TAAACTCTTTCCACATCATTCCTTTTAA-TGTTCTATTGAATCGTTCAACTGTGGACGCC 102509 Query 5367 TTGAGATTGCTGAATGTTGAATACAGATTTATCTTGTGCTGCTTCATCAGATCTTTGAAT 5426 || ||| ||| |||||||||| |||| || | | | | ||||| | | ||| Sbjct 102508 TTCAGAACGCTATATGTTGAATAGTGATTAATATGATTGTTTTGCATCAATTGATGAAAT 102449 Query 5427 TCTTTGTTGTAAAACTCTTTACCCTGATCAACATGGAGATTCTTAGG---GATACGACCT 5483 | | ||| ||||||||||||| | ||| || | ||| || || | | ||| | Sbjct 102448 TGACTATTGAAAAACTCTTTACCATCGTCAGTTTGTAAATTTTTCGGTTTGCGATGACTT 102389 Query 5484 TGCTGAAGTACAGACTTCATAGCACTTGTGACATCTACACCACTTTTAGACTTAATTGGA 5543 | || | | ||||||||| | || || | | | || |||| || | || Sbjct 102388 TTCTCGAAAATTTGCTTCATAGCGTTCGTTACGTTTTGAGCAGTTTTGTTTTTCACTGCC 102329 Query 5544 ACTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTA 5603 | ||||| || | ||| ||||| ||||||| | ||| | ||||| || || ||| Sbjct 102328 ATAGCCCAAGCCTTTTTCGAAAACGTATCTATTACTGTTAAAAGATAACGATAGCCGTTA 102269 Query 5604 TTGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACCT 5663 || | ||| || || || |||||||| || |||||||| ||||| | ||| Sbjct 102268 TTTTGTAGTGCTTAGCTTATGATTTCAACCAAATCGGCTTGCCATAAATCATCAATTCCT 102209 Query 5664 CGGATATCAACATGACGACGTTTATAGTTTCTACGAGCTGGTTTGTGAAGCTCTTCAGCT 5723 || ||| | | | ||| | | | |||| ||| ||||||| ||||| | | || Sbjct 102208 TTCATGAGAACTCGTCTTCTTTTGAAATGTTTACGTGCTTGTTTGTGTAGCTCATTAACT 102149 Query 5724 AT 5725 || Sbjct 102148 AT 102147 >seq288 Length=421819 Score = 89.7 bits (98), Expect = 1e-13 Identities = 275/423 (65%), Gaps = 2/423 (0%) Strand=Plus/Plus Query 7285 ACATGATCATCATAAATATGCTTCAGATTCATTTCATCTTGACGGAACAGCACGAGAAAG 7344 ||||| |||| || |||| ||| ||||||||||||||| || | | | | Sbjct 101494 ACATGGTCATTGTATGTATGTCTCACATTCATTTCATCTTGTTTAAATATTGCTATCATA 101553 Query 7345 TTTGCATTATCTCTAATCAGGTGCTTGGGTATTCGTGTATAAGTTTGACAGAGATAGAAG 7404 ||||||||||| | || | || || || |||| ||||| |||||||| | ||| ||| Sbjct 101554 TTTGCATTATCACGTATTAAATGTTTAGGAATTCTCGTATATGTTTGACATAAATAAAAG 101613 Query 7405 CTGTCAACATCCTTGTGTCGACCCATGCAGAAAAAAGCTTTGATGTGATCCTGTTTTTCA 7464 | |||| | || |||| ||||| ||| || || | || || ||||| || Sbjct 101614 CAATCAATGTGTTTATGTCTACCCAAGCAAAAGTAATTCCTTATAGTATTTTGTTTATCG 101673 Query 7465 CAAGCAACATCGTCAAATATCATCAAGGAGTTAGGCTTAG-CATCTTCAGGCTTGATTAC 7523 || ||||| || |||||||| | | | ||||| | | | | |||||| || || Sbjct 101674 CATATTACATCATCGAATATCATTATTAAATGTGGCTTTGCCTTATATAGGCTT-ATAAC 101732 Query 7524 AGCTTCATGTTCGCTGAATGTGAAGAATCCAATACCATCAATCTGTTTAAGCAGTGTCTC 7583 ||||| ||| ||||| || || ||| | | ||| | | || |||| || Sbjct 101733 TTTTTCATTTTCTGAAAATGTAAATAAGTTTATATCCTTTATCGGATCAATTAGTGCCTG 101792 Query 7584 CAGGAACTGATACTTTGGTTGGTTAAGAGACTTTGAGTAAAGATATATATTCTCAAACCT 7643 ||| | |||| |||||||| | ||| |||| || | || || || | ||| || Sbjct 101793 CAGATAACGATATTTTGGTTGACATAAAGATTTTGTATATATGTAGATGTTTTTAAAACT 101852 Query 7644 CAAACCGTTTGGATGTACAATAAGAGACAGCAGAGCATTCGTCTTTCCACAGTTTGATGG 7703 | ||| || ||| | | || || | || | |||| ||||| |||| |||||||| Sbjct 101853 GAGACCATTAGGACTTCCTATTAGGCTAATCATAACATTTGTCTTGTCACAATTTGATGG 101912 Query 7704 CCC 7706 || Sbjct 101913 TCC 101915 Score = 86.0 bits (94), Expect = 1e-12 Identities = 331/514 (64%), Gaps = 7/514 (1%) Strand=Plus/Plus Query 5217 GGTTTCATTTTGATGGTACTGTG-TATGGTGCTGTTGTAAGTATTCACCAAGTCATCAAG 5275 ||| ||||||| || || |||| |||| || | || || ||| || | || | | Sbjct 97728 GGTGTCATTTTTATCGTTTTGTGATATG-TGTTATTTTATTTATCGACAAGGTTCTTATA 97786 Query 5276 TGTATCGGCCCACTTGTAGCTGCCGCGATTTGTAAACTCTCGCCACATT-TTCGTCTTAA 5334 || || ||||| || ||| | || || |||||||| |||||| ||| | |||| Sbjct 97787 TGAATGAGCCCATTTATAGGTTCCTTGAAAAATAAACTCTTTCCACATCATTCCTTTTAA 97846 Query 5335 GTGTTCTATTGAAACGTTCACATATGGATGCTTTGAGATTGCTGAATGTTGAATACAGAT 5394 ||||||| | || ||||| |||||| || || ||| ||| |||||||||| ||| Sbjct 97847 -TGTTCTACTAAATCGTTCTACTATGGACGCGTTCAGAACGCTATATGTTGAATAGTGAT 97905 Query 5395 TTATCTTGTGCTGCTTCATCAGATCTTTGAATTCTTTGTTGTAAAACTCTTTACCCTGAT 5454 | || | | | | ||||| | | |||| || ||| ||||||||||||| | || Sbjct 97906 TAATATGATTGTTTTGCATCAATTGATGAAATTGATTATTGAAAAACTCTTTACCATCAT 97965 Query 5455 CAACATGGAGATTCTTAGG---GATACGACCTTGCTGAAGTACAGACTTCATAGCACTTG 5511 || ||| | ||| || || | | ||| || || || | |||||||||| | | Sbjct 97966 CAGTATGCATATTTTTCGGTTTGCCATGACTTTTCTCAAAAATTCTCTTCATAGCATTCG 98025 Query 5512 TGACATCTACACCACTTTTAGACTTAATTGGAACTGCCCAGGCATATTTTGAAAATATAT 5571 | || | | | || |||| || | | | ||||| || | ||| |||||| || Sbjct 98026 TTACGTTTTGAGCAGTTTTGTTTTTCACCGCCATAGCCCAAGCCTTTTTCGAAAATGTAG 98085 Query 5572 CTATGATTGTAAGCAGATACTTGTATCCTTTATTGACTGTTGCATATGGAATCATCTCAA 5631 | || | ||| | ||| | || || ||||| | || ||| ||||| |||| Sbjct 98086 CCATTACTGTTAAAAGACAACGATAACCGTTATTTTGTACTGTATAGCTTATCATTTCAA 98145 Query 5632 CCAAGTCAGCTTGCCAAGTCTCATCGAGACCTCGGATATCAACATGACGACGTTTATAGT 5691 | | | |||||||| ||||| | ||| ||| |||| | | | | | | | Sbjct 98146 CGAGACCTGCTTGCCACAAATCATCAATTCCTTTGATGACAACTCGTCTTCTTCTGAAAT 98205 Query 5692 TTCTACGAGCTGGTTTGTGAAGCTCTTCAGCTAT 5725 | |||| ||| ||||||| || || | | |||| Sbjct 98206 GTTTACGTGCTTGTTTGTGTAGTTCATTAACTAT 98239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97971613546830