Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq383 105 6e-18 seq565 104 2e-17 seq37 96.9 3e-15 seq451 91.5 1e-13 seq151 86.0 6e-12 seq528 84.2 2e-11 >seq383 Length=330124 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| || || || ||| | ||||| | ||| ||||| | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || ||| | || ||| ||| ||| ||||||||||| || ||||| |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAC--GTCAGCGACTATA 26946 || | | |||| | ||| || || || ||||||| | | | |||| ||||||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTATA 43901 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || ||||| |||||||| ||||| |||| | | ||| | ||||| Sbjct 43902 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 >seq565 Length=193464 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 ||||||||| | || ||||||||||||||||| ||| | ||||| | ||| | ||| | Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 159531 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || ||||| | || ||| |||||| ||||| ||||| || ||||| || Sbjct 159530 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 159471 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||| | | |||| | |||||| ||||| ||||| | | | | | ||| ||| Sbjct 159470 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 159411 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || || | ||| ||||||| Sbjct 159410 AATATTCAGAAGGAGTCAACCTTGCATTTGGTCCT 159376 >seq37 Length=1463180 Score = 96.9 bits (106), Expect = 3e-15 Identities = 335/510 (66%), Gaps = 27/510 (5%) Strand=Plus/Plus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| ||||||||||| | |||| || ||||| || | |||| ||| | || ||| Sbjct 1099456 ATGATGATTGACCACGATAAACTCACCAGACAGTACGCGTCGTGTGTAAACGTTTGAAGT 1099515 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 | ||||| || |||||||||||||| ||||| || ||||| | ||||| ||||| Sbjct 1099516 GTATGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGG 1099575 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATT--TCTCG--CTTAAGCTCGT 147624 ||| | || || ||||||| || | |||| | || | ||| ||||| | Sbjct 1099576 AGCTACCAGCAAAGAATTGC----GCACTCCATAACTTTTAATGTCGTCTTTAAGAGCCG 1099631 Query 147625 CCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCAC 147684 ||| ||||| |||||| | | | | ||| ||||| |||| | || | | || Sbjct 1099632 ACCAATTCCATAGATCAGTAG---GCGTTTTATCCCACATATCATATTGAAGGATACCTT 1099688 Query 147685 AACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATAC 147744 ||| | || || || || || | ||||| | |||| | |||| || | ||| || Sbjct 1099689 TACTAACGGGACTACCTTCATAGGTTTCGTACGGACCGTACTGTTTGGCCAATTCACAAC 1099748 Query 147745 T---TTGACTTAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAG 147801 | || || || ||||||||||| || ||||| |||| | ||||||||| | || Sbjct 1099749 TAGCTT--CTAAG-GCACCATAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAG 1099805 Query 147802 CCTCTTGGCTGTCGTAGGGCATATC-CA--AAATGGCGAACGTATCCGCAAGTCCTTGAA 147858 | || ||| || ||||| ||| | || ||| | || || |||| |||||| | Sbjct 1099806 CACTTTCGCTTTCATAGGG-ATAACGCATTAAAATTAGTGCG--TCAGCAAATCCTTGGA 1099862 Query 147859 TACCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCT--AGCCAACGGATA 147916 ||| | ||| || || || || | ||||| || ||| | | | || |||||| Sbjct 1099863 CACCTAAACCAATTGGACGATGACGAAAATTAGA--CTTTCTGGTTTCCGACAGCGGATA 1099920 Query 147917 AAAATTCAAGTCGATAATTTTATTGAGATT 147946 |||| | ||||| || || ||||| || Sbjct 1099921 GTAATTGACATCGATTATCTTGTTGAGGTT 1099950 >seq451 Length=246926 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | ||||||||||| |||| || || | ||||| | || | ||| | Sbjct 37999 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 37940 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 37939 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 37880 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || ||| || | |||| || || || ||| | ||||||| | | | | ||| || Sbjct 37879 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTA 37820 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| |||||||||||||| || | ||||| || Sbjct 37819 TAATATTCAAAAAGAATCCACATTACATCTTGT 37787 >seq151 Length=588408 Score = 86.0 bits (94), Expect = 6e-12 Identities = 328/507 (65%), Gaps = 21/507 (4%) Strand=Plus/Minus Query 147449 ATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTAGT 147508 ||| |||||||| || | | || || |||| || | |||| ||| | || || Sbjct 334753 ATGATGATTGACGACAATAAATTCACCGGACAATACACGTCGTGTGTAAACGTTTGACGT 334694 Query 147509 AAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATGTA 147568 | |||||||| |||||||| ||||| ||||| || ||||| | || || ||||| Sbjct 334693 GTATGGCTCGAAAGACTCGTTATTACCAAGAATTTGAGCAGTAGACGCGGTAGGCATTGG 334634 Query 147569 AGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATT--TCTCGC--TTAAGCTCGT 147624 || | || || |||||||| | || ||| | || | ||| ||||| | Sbjct 334633 TGCTACCAGCAAGGAATTGCGCACTCC----ATAACTCTTAATGTCGTCTTTAAGAGCCG 334578 Query 147625 CCCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCAC 147684 ||| ||||| |||||| | | | | ||| ||||| |||| | || | || || Sbjct 334577 ACCAATTCCATAGATCAGTAG---GCGTCTTATCCCACATATCATATTGAAGAATGCCTT 334521 Query 147685 AACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATAC 147744 ||| | || || || || || | ||||| | |||| |||| || | || || Sbjct 334520 TACTAACTGGACTACCTTCATATGTTTCGTAAGGACCGTATTGTTTGGCCAACTCACAAC 334461 Query 147745 TTTGACT-TAGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCC 147803 | | || || ||||||||||| || ||||| |||| | ||||||||| ||| Sbjct 334460 TA-GCCTCTAAAGCACCATAATATATGGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCA 334402 Query 147804 TCTTGGCTGTCGTAGGG----CATATCCAAAATGGCGAACGTATCCGCAAGTCCTTGAAT 147859 || | ||| || ||||| | || ||| | | | || || |||| |||||| | Sbjct 334401 TCCTCGCTTTCATAGGGGTAACGCATTAAAATTAGTG--CG--TCAGCAAATCCTTGGAC 334346 Query 147860 ACCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAA 147919 || |||||||| || || || | ||||| || || || | || |||||| | Sbjct 334345 GCCTATACCGATTGGACGATGACGTAAATTACATTTTTTGGCTTCCGGCAGCGGATAGTA 334286 Query 147920 ATTCAAGTCGATAATTTTATTGAGATT 147946 ||| | |||||| || |||||||| || Sbjct 334285 ATTGACGTCGATTATCTTATTGAGGTT 334259 >seq528 Length=219945 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 71642 TATAGTTTATTGCAATTCGAGCATAATCAAACGCATGATGAACTATGGAATGCTGCTCAG 71701 ||||| || | |||||||||| | || || ||||| | ||||| | ||||| Sbjct 31429 TATAGCTTGGAGGAATTCGAGCAGGCCCGTACCCACGATGACTTGTGGAACTCAGCTCAA 31370 Query 71702 CGACAGCT-ACGCAATGAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAA 71760 | || | | || | ||||||||||| ||||| | | || ||||| ||||| ||||| Sbjct 31369 CTGCAATTGATGCGA-GAGGGTAAAATGCACGGTTTTTTGCGTATGTATTGGGCTAAAAA 31311 Query 71761 GATTCTCGAGTGGACTCAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGA 71820 |||| | || ||| || ||| || || | || | || | |||| | | |||| || Sbjct 31310 GATTTTAGAATGGTCTAAAAGCCCGGAAGACGCTTTGGAATTTTCTCTACTTTTAAATGA 31251 Query 71821 TAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGGT 71863 |||||| ||| | || || ||||| || |||||||||||| Sbjct 31250 TAGATATAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 31208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478648070044400