Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq383 116 3e-21 seq451 113 4e-20 seq565 104 2e-17 seq161 100 2e-16 >seq383 Length=330124 Score = 116 bits (128), Expect = 3e-21 Identities = 156/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| || || || ||| | || || | ||||| || || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || ||| | || ||| ||| ||| |||||||||||||| ||||| |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTATA 24168 ||| | | |||| | ||| ||||| || ||||||| | | | | |||| || |||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTATA 43901 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 | || ||||| |||||||| | ||||| |||||| Sbjct 43902 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 43936 >seq451 Length=246926 Score = 113 bits (124), Expect = 4e-20 Identities = 164/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | ||||||||||| |||| || || | || || | || ||||| | Sbjct 37999 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 37940 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | || ||| |||||| |||||||| || || || ||||| Sbjct 37939 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 37880 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 || || || |||||| || || |||||| | ||||||| | | | |||||| Sbjct 37879 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTA 37820 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| |||||||||||||| ||| | ||| | ||||| | ||| |||| ||| Sbjct 37819 TAATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 37768 >seq565 Length=193464 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | || ||||||||||||||||| ||| | || || | ||||| || | Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 159531 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || ||||| | || ||| |||||| ||||| ||||| || ||||| || Sbjct 159530 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 159471 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || || | |||||| | |||||||||||| ||||| | | | | | ||||||| Sbjct 159470 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 159411 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGT 24199 || ||||| || || || || | ||||| || Sbjct 159410 AATATTCAGAAGGAGTCAACCTTGCATTTGGT 159379 >seq161 Length=579164 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 23975 TTTTTAGCCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCAT 24034 ||||||| | ||||||||| | ||||| ||||| | ||||| ||| | ||||| | Sbjct 362466 TTTTTAGAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTT 362407 Query 24035 CGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGG 24094 ||||| ||| | |||||| || || | ||||| || ||| || |||||||| Sbjct 362406 GGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGG 362347 Query 24095 CATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAA 24154 ||| ||||| |||||||| | |||||| || || || ||| | ||||||| | | Sbjct 362346 CATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCG-GA 362288 Query 24155 CGTCAGC-GATTATAACATTCAAAAAGAATCTAC 24187 | | | | ||||||||||| ||||| || || || Sbjct 362287 CTTTATCGGATTATAACATACAAAAGGAGTCGAC 362254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429923450571225