Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq565 100 2e-16 seq161 95.1 1e-14 seq383 93.3 3e-14 >seq565 Length=193464 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 || ||| | ||||| ||||| ||||||||||||||||| || | || || | | || Sbjct 150422 CAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 150481 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 ||||| |||||||| || |||| | ||||||||||| ||| | || || ||||| Sbjct 150482 TTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 150541 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || |||||| || || | | | ||| || || || ||||| |||||| Sbjct 150542 TTGGATTTTTGCT--TTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATG 150599 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||| |||| ||||| ||||| || |||||| Sbjct 150600 GTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| ||||| ||||| || ||| | || | ||||||||||| ||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || |||||| || || | | | ||| || | || Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCT--TTAACGTTTTCGATAGTATCCGACGATTCTA 150813 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| |||||||||||||| |||| ||||| ||||| || ||||| Sbjct 150814 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || || ||||| |||| || ||| |||| Sbjct 159148 AGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 159207 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||||||||| ||| | || | || ||||| || || | || || || || Sbjct 159208 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 159267 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | |||||| ||||| ||| | ||||||||| Sbjct 159268 TGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTC 159327 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| |||||||| ||||| ||||| Sbjct 159328 TTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || |||||||| || || ||||| |||| || ||| |||| Sbjct 158920 AGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCT 158979 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||||||||| ||| | || | || ||||| || || | || || || || Sbjct 158980 TCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCT 159039 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | || ||| ||||| ||| | ||||||||| Sbjct 159040 TGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTT 159099 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || |||| |||||||| ||||| ||||| Sbjct 159100 TTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | |||||||| || || || || ||||||||||||||||| || | | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| || |||| | ||||||||||| ||| Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 16829 ACGCCCTCTTTGTC 16842 | || || ||||| Sbjct 145886 ATACCTTCCTTGTC 145899 >seq161 Length=579164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 ||||||| |||| || ||||||||||||||||| || || | | || | || Sbjct 362239 AGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCT 362298 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||||||||| || || |||| | || ||||| || ||| | ||| ||||| || Sbjct 362299 TCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCC 362358 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | ||||||| ||||| ||||| || || ||| Sbjct 362359 TGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTT 362418 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 || || || || ||||| |||||||| |||||||| Sbjct 362419 TTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 >seq383 Length=330124 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | | |||| ||| ||||| || |||||||| || || ||||| | | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||| || || || ||| |||| | |||||||| || ||| Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCAC-AGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||||| ||||| | | | || ||| || ||| || Sbjct 43830 ATGCCTTCTTTGTCTTGAATTTT-TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | ||||||||||| || |||| ||||| ||||| |||||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405076175861050