Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq565 145 5e-30 seq383 131 1e-25 seq919 122 6e-23 seq99 116 2e-21 seq630 113 3e-20 seq104 113 3e-20 seq161 109 4e-19 seq451 104 2e-17 >seq565 Length=193464 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||||| | || |||||| |||||||||||||| ||| Sbjct 158905 CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 158964 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || |||||||| || ||||| || | ||||||||||| | |||| Sbjct 158965 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159024 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || |||||| ||| ||||||| | ||||| | || ||| Sbjct 159025 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACT 159084 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || |||||||| ||||| ||||| ||||| || |||||| Sbjct 159085 TCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | |||||||| | || |||||| |||||||||||||| ||| Sbjct 159133 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 159192 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| |||| || |||||||| || ||||| || | ||||||||||| | |||| Sbjct 159193 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159252 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| || || |||||| ||| || |||| | || || | || ||| Sbjct 159253 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACT 159312 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 ||||| || || || || || ||||| ||||| ||||| || |||||| Sbjct 159313 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 116 bits (128), Expect = 2e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | |||||| | |||||||| | || |||||| |||||||||||||||| Sbjct 156477 TACCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAG 156536 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| ||| |||| || |||||||| || ||||| || | ||||||||||| | || Sbjct 156537 ATAAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGG 156596 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCT 38247 ||| ||||| || || |||||| ||| ||||||| Sbjct 156597 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCT 156635 Score = 114 bits (126), Expect = 9e-21 Identities = 168/234 (72%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | |||||| |||||||| | ||| || || || || ||||||| Sbjct 150632 CATT-CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAAT 150690 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||||||| || |||| || || |||||||| ||||| || | || ||||| || | Sbjct 150691 CAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTG 150750 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TT 38264 || | ||||| ||||| |||||| || || || | || |||||| | || | Sbjct 150751 GAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGACGAT 150809 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || || ||||| || ||||| ||||| || ||||| |||||| Sbjct 150810 TCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 113 bits (124), Expect = 3e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | |||||| || |||||||| || || || || ||||| ||||| ||||| Sbjct 150864 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 150923 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | | || || ||||| || ||||| || | ||||||||||| | ||| Sbjct 150924 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 150983 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 || || ||||| || |||||| || ||||||| | |||||| ||||| Sbjct 150984 ACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 151043 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || |||||||| || ||||| || |||||||| |||||||| || Sbjct 151044 TCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTT 151093 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 38104 GCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGT 38163 |||| || ||||| | ||| |||||||| || |||||||||||||| || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 38164 CGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGT 38223 | || || ||||| || || || |||| || ||||| || | || | ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 38224 CCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAG 38283 | |||||| || || || | || |||||| ||| ||||| || || || | Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| ||||| || ||||| ||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38193 CGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACA 38252 ||||||||||| | ||||| ||||| || || |||||| ||| ||||||| | Sbjct 158779 CGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATG 158838 Query 38253 GTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATC 38312 ||||| | ||| |||||||| || || |||||||| ||||| ||||| ||||| || Sbjct 158839 GTATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATT 158898 Query 38313 TGCATG 38318 |||||| Sbjct 158899 TGCATG 158904 >seq383 Length=330124 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 ||| ||||||||||| || || |||||||| ||||| || || ||||| || | Sbjct 43939 ACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCC 43880 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || | || || |||||||| |||| ||| |||||||| | || | ||||||||| Sbjct 43879 ATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTT 43820 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAAT 38281 ||| ||||||| || || |||| | |||||| ||| |||||||| || || Sbjct 43819 GTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGAT 43760 Query 38282 AGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| ||||| || || ||||||||| Sbjct 43759 GGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 >seq919 Length=56259 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 3548 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAAGAATGTCGA 3489 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 3488 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 3454 >seq99 Length=881861 Score = 116 bits (128), Expect = 2e-21 Identities = 86/99 (87%), Gaps = 6/99 (6%) Strand=Plus/Plus Query 25898 TAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATC 25952 ||||| |||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 677570 TAATA-GCCCGTTCCCTTGGCTGTGGTTTCGCTAAATAGTAGATAGGGACAGAAAGAATC 677628 Query 25953 TCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||| |||||| ||||||||||||||||||||| Sbjct 677629 TCGTTGATCCATTCATGTGCGTCACTAATTAGATGACGA 677667 >seq630 Length=172243 Score = 113 bits (124), Expect = 3e-20 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG--GGTA---ATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| | | ||||| | Sbjct 17117 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAAGGATCTCTT 17058 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| | | |||||||||||||||||||| ||||| Sbjct 17057 TAATTCATCCATGCGCGTCACTAATTAGACGACGA 17023 >seq104 Length=804542 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCC 6233 || || || |||||||| | ||| ||||| || |||||||||||||| | ||| Sbjct 3809 AATGTGAACCGTAATGTTACAGACATTTTCTATCGGTACAAAATGCCGCGTTTACAAGCC 3868 Query 6234 AAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCT 6293 || ||||| ||||| || || || |||||||| || || || || ||| | ||||| || Sbjct 3869 AAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAATATGGCCGAAGTGGCA 3928 Query 6294 AAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCT 6353 || | ||||| || ||||| || || || ||||| || || |||||| | || ||| Sbjct 3929 CGAGCCATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGTTGCGAATTGGGTGCT 3988 Query 6354 CAGACGCAGTTTGAT 6368 || || || |||||| Sbjct 3989 CAAACTCAATTTGAT 4003 Score = 89.7 bits (98), Expect = 3e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||||||| ||||| ||||| || || || || | || || | || || | |||||| Sbjct 4102 AACGAGCGTTTCATTGTTAATGGCTCCCACGACGCAGCTAAATTACAAGATCTCCTTGAC 4161 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCTTATT 6494 || ||||| ||||||||||| | || | ||||||||||| ||||| || || |||| Sbjct 4162 GGTTTTATACGCAAGTTTGTCTTATGCCCTGAATGCGATAATCCGGAAACTGATCTTACA 4221 Query 6495 GTGTCTACCAAGAGAAACACCATCTCTCAGGGCTGCAAAGCGTGCGG 6541 || || | |||| | || || || ||| || ||||| ||||| Sbjct 4222 GTTTCAGCTAAGAATCAAACTATATCGCAGTCTTGTAAAGCATGCGG 4268 >seq161 Length=579164 Score = 109 bits (120), Expect = 4e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | ||||| || | || ||||||||| || || ||||| | Sbjct 362222 TACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCG 362281 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| || | || || |||||||| || || || || | ||||||||||| | | Sbjct 362282 ATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 362341 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||||||| ||| |||||| ||| ||||| | | ||| || | |||| Sbjct 362342 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 362401 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 |||| || ||||||||||| || || | ||||| || || || ||||| ||| Sbjct 362402 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 362454 >seq451 Length=246926 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||||||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| ||||| || || || | ||||| || |||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | || ||| || ||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | |||||| || || |||||||| || Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937423205245