Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq565 158 1e-33 seq383 156 4e-33 seq451 132 4e-26 >seq565 Length=193464 Score = 158 bits (174), Expect = 1e-33 Identities = 163/211 (77%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || |||||||| || ||| ||||||| | ||||| || | || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 25058 TGACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || |||||||| | | ||||||||| || ||||| ||||| ||||| || |||| Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAA-GACAAGGAAGGTATTCCTCCAGACC 150517 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 ||||||| | ||||| || |||||||| || ||||||| ||||| || ||||||| Sbjct 150516 AACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 150457 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 | || ||||| |||||||| | |||||||| Sbjct 150456 ACATACAAAAGGAATCCACATTGCATTTAGT 150426 Score = 150 bits (166), Expect = 2e-31 Identities = 161/210 (77%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || |||||||| || ||| ||||||| | ||||| || ||||| Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || |||||||| | | ||||||||| || ||||| ||||| ||||| || ||||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAA-GACAAGGAAGGTATTCCTCCAGACCA 150744 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || ||||| || ||||| | ||||| || |||||||| Sbjct 150743 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 150684 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || ||||||||||| | ||||| || Sbjct 150683 CATACAGAAAGAATCCACATTGCATTTGGT 150654 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| || ||||| || || || || ||| | ||||| | ||||| || | Sbjct 159591 AAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACC 159532 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| || |||||||| | || |||| || | ||| ||||| ||||| ||||| || Sbjct 159531 GTCAGATACTATCGAA--AATGTTAAAGCCAAGATTCAA-GACAAGGAAGGTATTCCTCC 159475 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||| || || | |||||||||||||| ||| | ||||| | ||||| || ||| Sbjct 159474 AGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGA 159415 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 ||| |||||||| || || || || | ||||| || ||| Sbjct 159414 TTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTA 159375 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| |||||| ||||||| | ||||| ||| | || Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| | ||| | |||| ||| || || ||||| || || || || || Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAA-GATAAGGAAGGAATCCCCCCAGATCA 159013 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||||||||| ||||| | ||||| || ||||||||| Sbjct 159012 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAA 158953 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||||| || || || || | ||||| || ||| Sbjct 158952 TATTCAGAAGGAGTCAACCTTGCATTTGGTTCTA 158919 Score = 118 bits (130), Expect = 9e-22 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || ||||| || || ||||||| | ||||| ||| | || Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| | |||| ||| || || ||||| || || || || || Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAA-GATAAGGAAGGAATCCCCCCAGATCA 159241 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||||||||| ||||| | ||||| || ||||||||| Sbjct 159240 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAA 159181 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||||| || || || || | ||||| || ||| Sbjct 159180 TATTCAGAAGGAGTCAACCTTGCATTTGGTCCTA 159147 Score = 104 bits (114), Expect = 2e-17 Identities = 104/134 (78%), Gaps = 1/134 (1%) Strand=Plus/Minus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 ||||||||| || ||||| ||||| ||||| || ||||||||||| | ||||| || Sbjct 145913 AAGCAAAAATCCAA-GACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTAATTTTCGCT 145855 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 ||||||||||| ||||||| ||||| || |||||||| || ||||| ||||| || Sbjct 145854 GGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACT 145795 Query 25197 CTACATTTAGTGCT 25210 || || || || || Sbjct 145794 CTTCACTTGGTACT 145781 >seq383 Length=330124 Score = 156 bits (172), Expect = 4e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| |||||||| |||||| ||||||| | ||||| || | || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| | | ||||||||| ||| ||||||||||| ||||| || || || Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAA-GACAAAGAAGGCATTCCTCCAGATCA 43842 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||||||||| || || | ||||||| ||||| || || || || Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 43902 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| ||||| ||||| ||||| ||||| ||| || | || | ||||| Sbjct 43903 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||| || || || ||||| ||||| || ||| | ||||| | || || ||| | Sbjct 43492 AAAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCC 43551 Query 25055 GTCTGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 |||||||||||| ||| | || |||| |||| ||| || || ||||| || || || Sbjct 43552 GTCTGACACTATTGAG--AATGTTAAAGCTAAAATTCA-AGATAAGGAAGGAATCCCGCC 43608 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | |||||||| || || ||||| || |||| || ||| | || Sbjct 43609 AGATCAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGA 43668 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || || || ||||| || || | |||||||| || Sbjct 43669 TTATAACATACAGAAAGAGTCAACTTTGCATTTAGTCCT 43707 >seq451 Length=246926 Score = 132 bits (146), Expect = 4e-26 Identities = 159/213 (75%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 37995 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 37936 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| | || |||| || | ||| |||||||| || |||||||| ||| Sbjct 37935 GACACTATCGAA--AATGTAAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGAC 37879 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | ||||| || || || ||||| ||||||| |||||| || |||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 |||||||||||||||||||| ||||| | ||| Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTG 37786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315351561925