Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq357 334 8e-87 seq90 123 3e-23 seq21 123 3e-23 >seq357 Length=326794 Score = 334 bits (370), Expect = 8e-87 Identities = 505/710 (71%), Gaps = 6/710 (1%) Strand=Plus/Plus Query 92918 AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG- 92976 || || | ||| || ||| ||||||| || | | |||| || | ||||| || | Sbjct 32051 AACAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATT 32110 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 ||| || || |||| || || ||||| || ||||| || ||| |||||| ||| | | Sbjct 32111 AAGTCG-ACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTAT 32169 Query 93037 GATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 ||||| | | || | |||| | |||||||||| | || || ||||||| || Sbjct 32170 TATTTCCAAAA-TCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCG 32228 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTG 93155 |||| || || || ||||| || |||||||||| ||||| ||| |||||||||| Sbjct 32229 CAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTG 32288 Query 93156 GTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATAC 93215 | | | ||| |||||||| ||||||||||| ||||| || || ||| ||| ||||||| Sbjct 32289 GCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATAC 32348 Query 93216 CTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATC 93274 |||| ||||| || || || | || |||||| | ||||| || |||| || | ||| Sbjct 32349 CTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGAT-ATC 32407 Query 93275 CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT 93334 || || ||||| || || || ||||||| | || | ||| || || || |||||| Sbjct 32408 CAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAAT 32467 Query 93335 AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCA 93394 || || || || | | ||||| || ||||| ||||| | | | ||||||||| Sbjct 32468 AGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCC 32527 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 || || ||||| ||||| |||||||| || || || || || | ||||| || || || Sbjct 32528 GAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGA 32587 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 || ||||| ||||||| || || | ||| ||||| || |||||||||||||| |||||| Sbjct 32588 ACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAA 32647 Query 93515 aaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGAT 93574 |||||||| | || |||||||| || ||| | | | || ||||||| Sbjct 32648 AAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCG 32707 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 | |||||| || || || |||||||| |||||||||| |||||||| || Sbjct 32708 ATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGATGCTTCCGC 32757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||||||||| | ||||||||| |||||||||||||||| ||||||||||| || || Sbjct 34111 TTTTTGTACATCTTCCATATGTCGGGATATTGAATTGGAAAAATGACAAAACGTTTGGGA 34170 Query 93686 TTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || ||||| || || ||||||| |||||| || Sbjct 34171 TTTTCTTTAAGCAATGGCTCTATGGATGGGTCGAA 34205 >seq90 Length=854215 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 764556 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 764497 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 764496 GTGGGTTCGAACCCCACACCTGACA 764472 >seq21 Length=1708200 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1283686 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1283627 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1283626 GTGGGTTCGAACCCCACACCTGACA 1283602 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 1317745 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 1317804 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 1317805 GTGGGTTCGAACCCCACACCTGACA 1317829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556844128979800