Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq383 125 6e-24 seq451 120 3e-22 seq161 118 9e-22 seq565 102 7e-17 >seq383 Length=330124 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| ||||| |||| || |||||||| || | ||| |||||| Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || ||| ||||||| |||||||||||| |||| |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | |||| ||| || || || |||||||| || || | || |||||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 43903 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || ||||| |||||||| || ||||| ||||| ||||| ||||| |||| Sbjct 43904 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCA 43952 >seq451 Length=246926 Score = 120 bits (132), Expect = 3e-22 Identities = 173/243 (71%), Gaps = 1/243 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || | | | |||||| || ||| |||||||| || |||| ||| Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || ||| | | |||| || || || |||||||||||| | || || |||||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCAATAAATAA 111423 ||||| ||||||||||| ||| ||||| | ||||||||| |||| ||||| | ||| || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG-AGCAAAAAA 37760 Query 111424 ACG 111426 ||| Sbjct 37759 ACG 37757 >seq161 Length=579164 Score = 118 bits (130), Expect = 9e-22 Identities = 175/247 (71%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 111167 TCATTTATAAGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTA 111226 |||||| || || | ||||||||||||||||||| ||||| | || |||||||| |||| Sbjct 362469 TCATTTTTA-GAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTA 362411 Query 111227 CCGTGGAAACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAG 111286 | ||||| || || ||| || ||| | || || |||||| || |||| Sbjct 362410 CTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAG 362351 Query 111287 AAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTA 111346 ||||| |||| ||||||||| | | |||| || || ||||||||||||||| Sbjct 362350 AAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGC 362291 Query 111347 AAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGC 111406 ||| | | |||||||| |||||||| || || || | || || || | ||||| | Sbjct 362290 GGACTTTATCGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCC 362231 Query 111407 GCGGTGG 111413 | ||||| Sbjct 362230 GTGGTGG 362224 >seq565 Length=193464 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||| || |||||||| || | ||| || || | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || |||||| || || ||||| | ||| |||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| ||||||||||||||||| || || ||||||| ||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || | ||||| || | |||||||||||||||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGGCA 158903 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||| ||||| ||||| ||| | ||| || || | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| || || ||||| | ||| |||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 ||| | | || | ||| ||||||||||||||||| || || ||||||| ||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || || || || | ||||| || | |||||||||||||||| Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGCA 159131 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 111176 AGAGTTTAAAAA-TGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAA 111234 ||| |||||||| ||||||| || || ||||| | || |||||||| || || ||||| Sbjct 159599 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 159540 Query 111235 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111294 ||||| ||| || | | | || ||| || ||| ||||| ||||| || Sbjct 159539 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATT 159480 Query 111295 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111354 || || || ||| | | |||| ||| ||||| ||| ||||||| || || Sbjct 159479 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 159420 Query 111355 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 ||||||||||||| || || || || || | ||||| || | ||||||||||||||| Sbjct 159419 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGC 159360 Query 111415 A 111415 | Sbjct 159359 A 159359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423027651859000