Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq451 132 4e-26 seq565 123 2e-23 seq383 122 7e-23 seq161 122 7e-23 >seq451 Length=246926 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| || | ||||| || |||||||||||||| || |||||| || || ||| ||| Sbjct 37783 CAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATC 37842 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||| || |||||| | || | || || ||||| || ||||| || |||||||| Sbjct 37843 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 37902 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 |||||| ||||| | ||| | ||||| | || |||||| || | || | || Sbjct 37903 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 37962 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || || |||||||||||||||||||| Sbjct 37963 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq565 Length=193464 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || ||||| | || |||||||| || ||||||||||| Sbjct 150633 ATTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCA 150692 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||||| | ||||| ||||| |||| | |||||||||||| ||| Sbjct 150693 GACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGA 150752 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| || ||||| |||| | | ||| | || || | ||||| Sbjct 150753 GGAATACCTTCCTTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTC 150811 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| || | ||||| || |||| |||||| ||||| || |||||| Sbjct 150812 TACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || ||||| ||||| ||||||||||| || || || ||| Sbjct 150422 CAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 150481 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||| | ||||| |||||| | || | |||||||||||| |||||||| ||||| ||||| Sbjct 150482 TTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTC 150541 Query 114290 GGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCG 114348 || ||||| |||| | | ||| | || || | | ||| || |||| || | | Sbjct 150542 TTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 114349 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || |||| |||||| ||||| || ||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | || || || || | |||||||| ||||| ||||||||||| Sbjct 145765 ACCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 145824 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| | |||||| |||||| | || | |||||||||||| ||||| Sbjct 145825 CAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGG 145884 Query 114275 AATGCCTTCTTTGTC 114289 ||| ||||| ||||| Sbjct 145885 AATACCTTCCTTGTC 145899 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| | | ||||| ||||| | || |||||||| ||||||||||| || Sbjct 150861 ATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCA 150920 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||| | ||||| ||||| |||| | ||| ||||| || || Sbjct 150921 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGT 150980 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || | || ||||| || ||| ||| |||||| | | |||| || |||| | || Sbjct 150981 GGGACACCCTCTTTATCTTGAAT-TTTAGTTTTAACATTCTCAATAGTATCGGATGGCTC 151039 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| || || || || |||||||| Sbjct 151040 AACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCAT 151090 >seq383 Length=330124 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 114171 AAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCT 114230 || || ||||| | ||||||||| ||||| || || || || || || || |||| Sbjct 43935 AACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCT 43876 Query 114231 TCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCG 114290 || || || ||||| || | || | |||||||| || |||||||||||||||||||| Sbjct 43875 TCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCT 43816 Query 114291 GCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||| ||||| |||| | | |||| || || | || ||| || || | || | || Sbjct 43815 TGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGT 43757 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 ||| || |||| |||||||||||| ||||||||| Sbjct 43756 TTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 >seq161 Length=579164 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || || || | || || || ||||| ||||| ||||| Sbjct 362221 ATACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCC 362280 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | ||||||||||||| | || | ||| ||||| || ||| Sbjct 362281 GATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGA 362340 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || ||| || || | | ||||| ||||||| | || Sbjct 362341 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 362400 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| || |||||||| |||||||| ||||| Sbjct 362401 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420122136670740