Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq565 156 1e-32 seq383 114 3e-20 seq161 114 3e-20 >seq565 Length=193464 Score = 156 bits (172), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | ||| | ||| | ||| |||||| || || || || || | Sbjct 150635 TCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGA 150694 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT-- 288363 | |||||| |||||||| || |||||||| || ||||||| ||||||||| ||| Sbjct 150695 CAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTG---GTCTGG 150751 Query 288364 -GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || ||||| || || |||||||| ||||| |||||||| |||| ||| |||||| Sbjct 150752 AGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTC 150811 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||| | ||||| || || || |||| ||| || || ||||| ||||| Sbjct 150812 TACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 129 bits (142), Expect = 1e-24 Identities = 171/235 (73%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | ||| | || || || || ||||| || | Sbjct 159129 CATG-CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAAT 159187 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||||||||| |||||||| || || ||||||| ||| ||||| || Sbjct 159188 CGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTG---AT 159244 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||||||||| ||||| || ||||| || || ||||| || || | ||| | Sbjct 159245 CTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAG 159304 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| ||||| || |||| || |||||||| || ||||| Sbjct 159305 GCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 123 bits (136), Expect = 6e-23 Identities = 170/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | ||| | || || || || ||||| || | Sbjct 158901 CATG-CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAAT 158959 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||||||||| |||||||| || || ||||||| ||| ||||| || Sbjct 158960 CGGACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTG---AT 159016 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||||||||| ||||| || ||||| || || || || || || | |||| | Sbjct 159017 CTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAG 159076 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| | ||||| || || || |||| || |||||||| || ||||| Sbjct 159077 GCTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/236 (70%), Gaps = 7/236 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| |||||||| || | || || | ||| | || || || || |||||||| | Sbjct 159357 CATG-CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAAT 159415 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| | |||||||||||||| | ||| || || || || |||| ||| || || | Sbjct 159416 CGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTG---GT 159472 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || || || ||||| || || || || || ||||| || ||||| |||| ||| || Sbjct 159473 CTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACG 159532 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| ||||| | ||||| || || || || | || || ||||| || |||||| Sbjct 159533 GTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATT 159588 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || ||||| || || | | |||||||||||||| |||||||| || || ||| Sbjct 156515 TCCTTCTGAATATTGTAATCAGATAAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAG 156574 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 |||| ||| ||||| |||| ||||||||||| ||||| || ||||| || || || Sbjct 156575 ATCAAACGTTGTTG---ATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACA 156631 Query 288400 TTTTCTATAGAATCG 288414 || || || | |||| Sbjct 156632 TTCTCAATGGTATCG 156646 >seq383 Length=330124 Score = 114 bits (126), Expect = 3e-20 Identities = 143/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||||||||||||||| | | ||||| || ||||| | || || || || || Sbjct 43915 TTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAA 43856 Query 288342 GATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 || | |||||||| |||| || || |||||||| || || ||||| ||||| || Sbjct 43855 AATTAAGCGCTGTTG---ATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAAC 43799 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||| || |||| ||| | ||||||||| | ||||| || || || |||| ||| || Sbjct 43798 GTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTT 43739 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 43738 TACAAAGATCTGCAT 43724 Score = 105 bits (116), Expect = 2e-17 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| || || ||||| || | || || || || || || ||||| ||||| || || Sbjct 43686 TCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 43627 Query 288343 ATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | |||||| ||| ||||| ||||||||| ||||| || ||||| ||||| || Sbjct 43626 ATTAAACGCTGCTGA---TCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCTTTAACA 43570 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || |||| || || || || || | ||||| || || || |||| ||||| Sbjct 43569 TTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTC 43510 Query 288460 ACGAATATCTGCATT 288474 ||||| ||||||||| Sbjct 43509 ACGAAGATCTGCATT 43495 >seq161 Length=579164 Score = 114 bits (126), Expect = 3e-20 Identities = 172/243 (71%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | || || ||||| || ||||| || | Sbjct 362224 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 362283 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || ||||| |||||||| || ||||| |||| ||| |||||| ||||| Sbjct 362284 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGA---TCTGGA 362340 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||| || || || ||||| |||| ||| | || Sbjct 362341 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 362400 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| | || || || || || || ||||| || || || || |||||| | ||||| Sbjct 362401 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATTC 362460 Query 288484 TAA 288486 ||| Sbjct 362461 TAA 362463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179618201198810