Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq451 122 9e-23 seq565 102 9e-17 seq383 89.7 6e-13 seq700 84.2 2e-11 seq205 84.2 2e-11 seq869 82.4 8e-11 seq538 82.4 8e-11 seq438 82.4 8e-11 seq391 82.4 8e-11 seq193 82.4 8e-11 seq15 82.4 8e-11 seq11 82.4 8e-11 >seq451 Length=246926 Score = 122 bits (134), Expect = 9e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || |||| ||||||||||| | ||| |||||| || ||||||||||| ||||| | | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || | ||||| |||||||| || | ||| |||||||||| ||| Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| |||||| ||| | || | ||| | | | | ||||| | ||| || Sbjct 37889 ATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 37947 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 || | |||||||| ||||||||||| || |||||||| || ||||| || Sbjct 37948 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq565 Length=193464 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| ||||||||||||||| || || || || |||||||||| || || || | Sbjct 150647 ACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 150706 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || | ||| || ||||| || || | ||||| ||||| | || | | ||||| Sbjct 150707 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 150766 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||||||| ||| | | | | || || |||||| || || | ||||| Sbjct 150767 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 150826 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || | || || ||||| |||||||| Sbjct 150827 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 41995 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 42054 |||| || |||||||||||| |||||||| || |||||||||| || || || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 42055 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGT 42114 | || | ||| || |||||||| || | ||||| ||||| | || | | ||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 42115 CCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGG 42174 | ||||||| ||| | | | | || || | ||| || || | ||||||| Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || | || || ||||| ||||||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| || |||||| |||||||| ||||| | || || || |||| || Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 || ||||| || || || || | || |||||||| | || | | ||||||| | || Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGT-CTTG 159497 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 42178 | | || | ||| | | | | || || || ||| || || | ||||| ||||| Sbjct 159498 AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTT 159557 Query 42179 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 ||| |||| || ||||| |||||||||||||| Sbjct 159558 GCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 >seq383 Length=330124 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| ||||||||||| | || |||||||| ||||| || || | | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || ||||||||||| || || || | ||||| || || | || Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCAC 42160 | || || ||||| ||| |||||| || | ||| | | | || || | ||| || Sbjct 43830 ATGCCTTCTTTGTCT-TGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | ||||||||||| || || | || ||||||||||| ||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq700 Length=133323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 28244 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 28303 Query 57067 TACTACCGAGGATT 57080 ||||| |||||||| Sbjct 28304 TACTATCGAGGATT 28317 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 23656 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 23715 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 23716 TACTATCGAGGAT 23728 >seq205 Length=499504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 192767 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 192826 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 192827 ATACTATCGAGGACTG 192842 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 132679 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 132738 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 132739 TACTATCGAGGACTG 132753 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 133255 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 133314 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 133315 ATACTATCGAGGA 133327 >seq869 Length=75817 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 59442 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 59383 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 59382 TACTATCGAGGAT 59370 >seq538 Length=218903 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 6596 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 6655 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 6656 TACTATCGAGGAT 6668 >seq438 Length=253823 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 164523 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 164464 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 164463 TACTATCGAGGAT 164451 >seq391 Length=285329 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 || |||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 225483 TTACTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 225424 Query 57064 CTATACTACCGAGGA 57078 |||||||| |||||| Sbjct 225423 CTATACTATCGAGGA 225409 >seq193 Length=530083 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 525291 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 525350 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 525351 TACTATCGAGGAT 525363 >seq15 Length=1977833 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 966110 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 966169 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 966170 TACTATCGAGGAT 966182 >seq11 Length=2119815 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | ||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13515 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 13574 Query 57067 TACTACCGAGGAT 57079 ||||| ||||||| Sbjct 13575 TACTATCGAGGAT 13587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543196537566800