Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq383 143 3e-29 seq565 131 2e-25 seq451 113 5e-20 seq161 93.3 4e-14 seq328 84.2 2e-11 >seq383 Length=330124 Score = 143 bits (158), Expect = 3e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | ||| ||||| ||||| || || || |||| | |||||| | ||||| Sbjct 43933 CACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCATCTTC 43874 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| |||||| |||| | ||||| || || |||||||| |||||||| ||||| Sbjct 43873 CAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTG 43814 Query 64354 TATTTTTTGCTTTA-CAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 |||||| |||||| | ||| | ||||| || || ||||||| ||| | ||| | Sbjct 43813 AATTTTT-GCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTT 43755 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || |||||||||||||| || || ||||| Sbjct 43754 TACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | ||| | || || || || ||||| || ||||| | Sbjct 159361 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 159420 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| || |||||||||||| |||| | || |||||||| |||||| Sbjct 159421 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 159480 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| | | || ||||| ||| || | ||||| | || || Sbjct 159481 ATACCTTCCTTGTCTTG-AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 159539 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | ||| | || ||||| || || ||||||||||| ||||||||||| Sbjct 159540 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 |||| ||| | || ||||| ||||| ||||||||||| | | ||||| | ||||| Sbjct 150426 ACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCC 150485 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 | ||| ||||| || |||| | ||||| ||||| |||||||| ||||| || ||||| Sbjct 150486 AACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 150545 Query 64355 ATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 | |||||||||| || || | ||||| | || ||||| | ||| | ||| || Sbjct 150546 A-TTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTT 150604 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || || ||||||||| Sbjct 150605 TCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 118 bits (130), Expect = 1e-21 Identities = 149/200 (75%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || |||||||| || ||||||||||| | | ||||| ||||||| | ||| || || Sbjct 150666 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 150725 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | ||||| ||||| |||||||| ||||| || ||||| | |||||||||| Sbjct 150726 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTTTGCTTT 150784 Query 64367 -ACAACCTCCACTGTATCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || || | |||| ||| || || ||||| | ||| | ||| || || |||||| Sbjct 150785 AACGTTTTCGATAGTAT--CCGACGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAA 150842 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| || || |||||||| Sbjct 150843 GTTTTAACAAATATTTGCAT 150862 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | ||| | || || || || ||||| |||||||| | Sbjct 158905 CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 158964 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| | || ||||| ||| | || | || || || || || || Sbjct 158965 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159024 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| ||| ||| ||| | ||||| | || ||| Sbjct 159025 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACT 159084 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | ||| || || ||||| ||||| |||||||||||||| Sbjct 159085 TCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | || || | ||| | || || || || ||||| |||||||| | Sbjct 159133 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 159192 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| ||||||| | || ||||| ||| | || | || || || || || || Sbjct 159193 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159252 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 |||||||| || ||||| ||||| ||| || ||| | ||| || | || ||| Sbjct 159253 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACT 159312 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| || | ||||||||| ||||| ||||| |||||||||||||| Sbjct 159313 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | ||||| | ||||| | || Sbjct 145790 TGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTGT 145849 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| || |||| | ||||| ||||| |||||||| ||||| || ||||| | |||| Sbjct 145850 TTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGA-TTTT 145908 Query 64361 TGCTTTA 64367 ||||||| Sbjct 145909 TGCTTTA 145915 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||||||||| ||||||||||| || | || ||||| | | ||| | ||| ||||| Sbjct 150894 GTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCA 150953 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || || || || || || | || ||||| ||||| ||||| || Sbjct 150954 GCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTA 151013 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| | || || || | || | || || || ||||| || Sbjct 151014 ACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTC 151073 Query 64427 TTTACGAAAATTTGCATTTTAATAA 64451 || ||||| || |||||||||| || Sbjct 151074 TTCACGAAGATCTGCATTTTAAAAA 151098 >seq451 Length=246926 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | ||| ||||| | || |||||||||||||| || ||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||||| || || |||| | || ||||||||||| ||| Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || || || |||||| || | || || || || || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| || | |||||||| ||||| ||||| || Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq161 Length=579164 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| ||||| ||||| | | || ||| | ||||| | || || || Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || |||||||| |||||||| || || ||||| ||| Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| | ||| | || ||||| || | |||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || || |||||||||||||| ||| Sbjct 362434 TTAACAAAAATTTGCATTTTTATA 362457 >seq328 Length=348652 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||| | || || ||||||||||||||||| || |||| || |||||||| || || ||| Sbjct 187639 GGATTACATGGCTTTCATGTTCACGAATTTGGGGACAATACTAACGGCTGTACTTCTGCC 187580 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || | |||||| || || | || |||| || || ||||| | | | ||||| Sbjct 187579 GGTGCGCATTTTAATCCTTGCAAAAAAGAGCATGGAGCACCCACTGATGATGAGCGCCAT 187520 Query 115481 GTCGGTGATCTGGGCAACGTCGAATC 115506 |||||||| ||||||| || || || Sbjct 187519 ATCGGTGATTTGGGCAATGTTGAGTC 187494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499629841883800