Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq565 145 5e-30 seq451 134 1e-26 seq161 132 3e-26 seq383 113 3e-20 seq17 107 1e-18 >seq565 Length=193464 Score = 145 bits (160), Expect = 5e-30 Identities = 164/215 (76%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || |||||||| | || || || ||||||||||||||||| || ||| || | | Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCAT 150480 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || |||||||||||| | || |||||||||||||| ||||| |||||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATG 15141 | ||||| ||| || |||| |||||||| | || |||||| || || || ||| Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGATGGTTCTACTTCCAAAGTGATG 150599 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || |||| |||||| ||||| |||||||| Sbjct 150600 GTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 136 bits (150), Expect = 3e-27 Identities = 170/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | || ||| ||||| | ||| || || || || || ||||||||| Sbjct 158903 TGCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG- 158961 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || ||||||| |||||||||||||| | |||||||| ||||| || Sbjct 158962 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGG 159020 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || ||||||||||| || |||||| || ||| | || || |||||| | || Sbjct 159021 GGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTC 159080 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || ||||||||||| |||| ||||| || ||||||||||| Sbjct 159081 GACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGT 15022 || || ||||| | || || ||||| |||||||||||||| || || || ||| Sbjct 150651 AATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCA--GACAACGTGCGGCCGT 150708 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||| ||||| | ||||||||||||||||| ||||| |||||||||| Sbjct 150709 CTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150768 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| ||| || |||| |||||||| |||||| || || || |||| Sbjct 150769 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGG 150828 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || |||| |||||| ||||| |||||||| Sbjct 150829 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 118 bits (130), Expect = 8e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | || || ||||| | ||| || || || || || ||||||||| Sbjct 159131 TGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG- 159189 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || ||||||| |||||||||||||| | |||||||| ||||| || Sbjct 159190 -GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGG 159248 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 || ||||||||||| || |||||| || || | || || || ||| | || Sbjct 159249 GGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTC 159308 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| ||||| || || |||| ||||| || ||||||||||| Sbjct 159309 GACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 114 bits (126), Expect = 9e-21 Identities = 170/239 (71%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| |||| | || || ||||| | ||| || || || || || || |||||| Sbjct 159359 TGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG- 159417 Query 15008 TGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 || || || ||||||| | ||| ||||| || | |||||||| || ||||| Sbjct 159418 -GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGG 159476 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| ||||||||||| ||| ||| ||| ||| |||| |||||||| ||| Sbjct 159477 AGGAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTC 159536 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || || || || ||||| || || | |||||||| || |||||||| ||| ||| Sbjct 159537 AACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTTTAAA 159595 Score = 113 bits (124), Expect = 3e-20 Identities = 168/237 (71%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | |||||| ||||| || || || ||||| || |||||||| || Sbjct 150862 TGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAG 150921 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | | ||| || ||||||||||| | |||||||| ||||| || || Sbjct 150922 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTG 150981 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | | || || || || |||||| |||| ||| | || ||||||||| || | Sbjct 150982 GGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 151041 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 | || ||||| || ||||| || |||| || || || || || ||||| ||| ||| Sbjct 151042 CCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCAT-TTTAAAA 151097 Score = 109 bits (120), Expect = 4e-19 Identities = 116/151 (77%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || || ||||| ||||| || ||||||||||||||||| || ||| || | |||| Sbjct 145784 ACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA--GACAATGTGCGGCCATCTT 145841 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||||||||||||| | || |||||||||||||| ||||| ||||||||||| Sbjct 145842 CCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTT 145901 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATC 15116 ||||| ||| || |||| |||||||| Sbjct 145902 GGATTTTTGCTTTAACGTTTTCGATAGTATC 145932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 15048 CAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTC 15107 |||||| ||||| || || ||||||||||| || |||||| || ||| | || Sbjct 158775 CAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTC 158834 Query 15108 TATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAA 15167 || |||||| | ||| || ||||| || ||||||||||| |||| ||||| || || Sbjct 158835 AATGGTATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAA 158894 Query 15168 AATTTGCAT 15176 ||||||||| Sbjct 158895 AATTTGCAT 158903 Score = 82.4 bits (90), Expect = 5e-11 Identities = 119/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | || || ||||| | || || || || || || |||||||| Sbjct 156479 CCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAT 156538 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||||| |||||||||||||| | |||||||| ||||| || || Sbjct 156539 AAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 156598 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCG 15117 ||||||||||| || |||||| || ||| | || || |||||| Sbjct 156599 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCG 156646 >seq451 Length=246926 Score = 134 bits (148), Expect = 1e-26 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | || || | ||| | || || |||||||| || || |||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCG--G 37826 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || |||||| | ||||| || || |||||| || Sbjct 37827 ACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 37886 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| | Sbjct 37887 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGA 37946 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 37947 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq161 Length=579164 Score = 132 bits (146), Expect = 3e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || | ||| || || ||||||||||| ||||| | | | | | | ||||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| |||||| | |||||||| ||||| || ||||| ||||| || || | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || ||| |||| ||||| ||| | || || || || ||||| ||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 || || |||||||| |||||||||||||| ||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCATTTTT 362454 >seq383 Length=330124 Score = 113 bits (124), Expect = 3e-20 Identities = 166/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 14946 TCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC 15005 |||||| || || | | ||| || ||||| || ||||| || ||||| || || || || Sbjct 43954 TCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTC 43895 Query 15006 GCTGAGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCG 15063 ||| || || | ||||| | || || || || | || || |||||||| || Sbjct 43894 --TGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCT 43837 Query 15064 TTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT 15123 ||||| ||||| ||||| |||||| ||| || | || |||||||| | Sbjct 43836 GGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGT 43777 Query 15124 TCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| ||||| || |||||||||||||||| |||||||||||| || ||||| Sbjct 43776 TCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||| || ||||| | | |||||||| | || || ||||| |||||||| ||||| Sbjct 43724 TGCCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCG 43665 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || ||||| || ||||| | || |||||||| || || | Sbjct 43664 AAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCG 43605 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || |||||| ||| ||| | || ||||| || || | Sbjct 43604 GGATTCCTTCCTTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAA 43545 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTT--GAAAT 15185 | ||||| || || ||||| || |||| || || || || || ||||| ||| ||||| Sbjct 43544 CCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTAAGAAAT 43485 >seq17 Length=1967559 Score = 107 bits (118), Expect = 1e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 14964 TAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTC 15023 |||||| ||||| || || | | ||||||||||| || | | || | | || Sbjct 595082 TAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAACTATC 595023 Query 15024 TTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTC 15083 |||||| || ||||| || || ||||| || |||| | |||||| || ||||| || Sbjct 595022 TTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCCTTATC 594963 Query 15084 ACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGT 15143 ||| |||||||| | |||| ||||||||| | ||| || ||||| |||| ||| Sbjct 594962 CTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTAAGGGT 594903 Query 15144 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 || || || | ||||| |||||||| ||||| ||| ||| || Sbjct 594902 ATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTTTCAAAAAA 594859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357381568062575