Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq451 150 2e-31 seq161 149 6e-31 seq37 145 7e-30 seq383 123 2e-23 seq565 118 1e-21 >seq451 Length=246926 Score = 150 bits (166), Expect = 2e-31 Identities = 178/239 (74%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 45104 TTATTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATT 45163 || |||| ||| || || | | |||||| ||||| | || ||||| ||||| ||||| Sbjct 37759 TTTTTTTGCTCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATT 37818 Query 45164 ATAATCGCTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGC 45221 ||||||| ||| | | || ||| |||||||| ||||| ||| | |||||||||||| Sbjct 37819 ATAATCG--GACAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGC 37876 Query 45222 TGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCG 45281 ||||| || ||||| || ||||| || ||||| || ||| | ||| | ||||| Sbjct 37877 TGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCC 37936 Query 45282 GAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||||| || ||||| | || ||||| ||||| |||||||||||||| ||||| Sbjct 37937 GAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq161 Length=579164 Score = 149 bits (164), Expect = 6e-31 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 |||| || || ||||| | | || | |||| || || |||||||| || ||||||| Sbjct 362219 TTATACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAAT 362278 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | || ||| ||||||||||| || ||| | ||||| ||||| || || | Sbjct 362279 CCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTG 362338 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACT 45288 | ||||||||||||||||| |||||||| |||| ||| | |||||||||| || Sbjct 362339 GAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCT 362398 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| | ||||| |||||||| || |||||||| |||||||||||||| Sbjct 362399 CAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 >seq37 Length=1463180 Score = 145 bits (160), Expect = 7e-30 Identities = 876/1384 (63%), Gaps = 43/1384 (3%) Strand=Plus/Minus Query 123313 TAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGG 123372 |||| || ||||| | ||| | | ||| ||| | ||||| ||| || | ||| | Sbjct 1100474 TAGAGCCTTGGCATGCAGATATATTCGAATTTCTCAATTTGAAAAAGAATACGGGTAAAG 1100415 Query 123373 AAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGAC 123432 | ||| | || || ||||| || || ||| | ||| |||| ||| | || ||| | Sbjct 1100414 AGGAAGATCGTGCACGGGATTTATTTTATGCTCTGTGGATACCGGATCTTTTCATGAAAA 1100355 Query 123433 GCGTAAAAGACGACG-GCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGC 123491 | ||| | | || | || | ||||| || ||||||||| || || || |||||| | Sbjct 1100354 GAGTAGAGGCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGT 1100296 Query 123492 GACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAG 123551 || |||| || || | ||||| | || ||| ||||||| ||| |||||| | Sbjct 1100295 GAAATTTATGGAGATAAATTTGATAAATTATACATAAAATACGAAGACGAGGGCAAAGCG 1100236 Query 123552 GTTAGTCAGGTTCCGGCACGTGATTT---GTTCAAATTTATTATCGAAACACAAGTCGAA 123608 || | || |||||||| |||| | | | | | ||||| || Sbjct 1100235 AATAAAACAATAAAAGCTCGTGATTTATGGTTCGCAATATGCAGTG---CCCAAGTAGAG 1100179 Query 123609 ACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAAC 123668 ||||| || || |||||||| |||||||| || || || | |||| ||||| || Sbjct 1100178 ACCGGGACTCCTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTAATCAACAGAAT 1100119 Query 123669 TTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGAT 123728 | || || |||||||| ||||| | || | ||||| ||||||| | | || Sbjct 1100118 GTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGAATATACATCACCTGAA 1100059 Query 123729 CAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGT-GAATCGTTGCGTCGAAAACGG--- 123784 || | || || || ||| | || || ||| |||| |||| | ||| || || | Sbjct 1100058 GAAATAGCAGTTTGCAATCTAGCCTCAATT-GCGTTGAATATGTTCGT-GACCACAGATA 1100001 Query 123785 --CGCTTTTAATTTC-CAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAA 123841 | | | | |||| ||||| ||||| | | || | || || || | || Sbjct 1100000 AACAATATGATTTTCACAAAC--TCAAAGAAGTTGCCAAGCTTATAACAAGAAACCTCAA 1099943 Query 123842 CAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACA 123901 ||| || |||||||| |||| ||||| || |||| | | ||||||||| || Sbjct 1099942 CAAGATAATCGATGTCAATTACTATCCGCTGTCGGAAACCAGAAAGTCTAATTTTCGTCA 1099883 Query 123902 CAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCC 123961 | || | || | || | ||||| || || ||||| | | | |||| || Sbjct 1099882 TCGTCCAATTGGTTTAGGTGTCCAAGGATTTGCTGACGCACTAATTTTAATGCGTTATCC 1099823 Query 123962 GTACGAAAGCGACGAAGCAAAGTT-GCTTAA-TACGCAAATAGCCGAAACAATTTATTAC 124019 || |||||||| ||| | |||||| || ||||| |||||||| ||||| Sbjct 1099822 CTATGAAAGCGA--AAGTGCTGCACGCTTAAATAAACAAATTTTTGAAACAATATATTAT 1099765 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 || || || || || || || ||| | || ||| |||| ||||||||| || | Sbjct 1099764 GGTGCCTTAGAAGCTAGTTGTGAATTGGCCAAACAGTACGGTCCGTACGAAACCTATGAA 1099705 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 || || || | || |||||| | || || || |||||| || || || || || Sbjct 1099704 GGTAGTCCCGTTAGTAAAGGTATCCTTCAATATGATATGTGGGATAAAACGCCTACTGAT 1099645 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTG 124199 | ||| | ||| | | | ||| | ||| | | || |||| || || || Sbjct 1099644 CTATGGAATTGGTCGGCTCTTAAAGACGACATTAAAAGTTATGGAGTGCGCAATTCTTTG 1099585 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 |||| || ||||| ||||| | |||||||||||| | || |||||||| || || Sbjct 1099584 CTGGTAGCTCCAATGCCTACGGCGTCTACTGCTCAAATTCTTGGTAACAACGAGTCTTTT 1099525 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATA 124319 ||||| | |||| || | ||| ||||| || | | || || ||| ||| | Sbjct 1099524 GAGCCATACACTTCAAACGTTTACACACGACGCGTACTGTCTGGTGAGTTTATCGTGGTC 1099465 Query 124320 AATCATCATTTGGTGGACGACTTGGTGGCGTT--AAATTTGTACGATGAAAACATGCGCA 124377 |||||||||||| | | || ||| | || |||| | |||| |||||| | Sbjct 1099464 AATCATCATTTGCTTAAAGATTTGACTGAATTGGGCCTTTGGA--ATGATAACATGAAAA 1099407 Query 124378 ACGAAATTATTGCGGCCGGTGGCAGC---GTGCAGCGCATCGCTTCGATTCCGGAACACG 124434 || || |||| ||| | || || | || ||||| | || || || | Sbjct 1099406 ACTTAA-TATT--GGCACATCGCGGCTCAATACAAAACATCGAAACCATACCTGACAGCA 1099350 Query 124435 TCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAATAAACGATTAATTGAAATG 124490 | || || | || ||||| || |||||||| | ||||| ||| |||| | ||| Sbjct 1099349 TAAAAGAATTATATAAAACGGTTTGGGAAATTTCGGTAAAATCAACCATTA----ACATG 1099294 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAA 124550 || || || || ||||| | || || ||||||||||| |||||| | ||||| ||| Sbjct 1099293 GCTGTTGATCGCGGCGCTTTCATCGACCAAAGTCAATCGTTTAACATACACGTAGCTGAA 1099234 Query 124551 CCCACCTACGCCCGCATGACCAGC-ATACACATGCACGCGTGGAGCAGCGGACTCAAAAC 124609 || | || | || | | | ||||| | | | |||| ||| | ||||| Sbjct 1099233 CCTAGTTATG-GTAAATTATCTTCTATACATTTTTATGGATGGAAGGCCGGTTTGAAAAC 1099175 Query 124610 GGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAA 124669 || ||||||||| ||||||| || || || || || |||| |||||||| ||||| || Sbjct 1099174 CGGTATGTATTACCTAAGAACAAAGCCAGCAGCAAATCCCATACAATTTACAGTCGATAA 1099115 Query 124670 ATCT 124673 | || Sbjct 1099114 AACT 1099111 >seq383 Length=330124 Score = 123 bits (136), Expect = 2e-23 Identities = 168/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 |||||||| || | ||||| | ||| ||||| |||||||||||||||||||| || || Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTC--TG 43893 Query 45174 AC--GGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || ||| ||| |||| || || || || | || || || || || || || | Sbjct 43892 ACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAG 43833 Query 45232 GAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCG 45290 ||||||||||||| |||||||||||| ||| | || | || | || || || | || Sbjct 43832 GAATGCCTTCTTTGTCTTGAATTTTTGCTTTAA-CGTTCTCAATAGTATCCGAGGGTTCT 43774 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || | |||||||||||| || ||||| Sbjct 43773 ACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| ||||| ||||| || || || || |||||||| | || ||| ||| Sbjct 43704 ACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCC 43645 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 ||||| ||||| || | || || || ||||| || ||||| || ||||| ||||||||| Sbjct 43644 AATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGA 43585 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||| | || | ||||| || | ||| || || | ||| | |||||| Sbjct 43584 ATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTG 43525 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | || || || || || ||||| Sbjct 43524 CCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq565 Length=193464 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| ||||| ||||| || ||||| |||||| Sbjct 158902 ATGCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG 158961 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||||||||| || || | ||||| ||||| || || || Sbjct 158962 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGG 159021 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| |||||||||||||| |||| || | ||| ||||||| |||| Sbjct 159022 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCG 159081 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||| || || | ||||| || ||||||||||| Sbjct 159082 ACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| ||||| ||||| || ||||| |||||| Sbjct 159130 ATGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG 159189 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||||||||| || || | ||||| ||||| || || || Sbjct 159190 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGG 159249 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| |||||||||||||| |||| || | || | |||||||||| ||| Sbjct 159250 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGA-CGTTCTCAATTGTGTCGGAAGGCTC 159308 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | || | || ||||| || | ||||| || ||||||||||| Sbjct 159309 GACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || | ||||| ||||| ||||| || |||||||||||| Sbjct 159358 ATGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG 159417 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||| ||| || || || | ||||| ||||||||||| || Sbjct 159418 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGA 159477 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || |||||||| || ||| | ||| | || || || | || Sbjct 159478 GGAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 159537 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | |||||||| |||| |||||||| || |||||||| Sbjct 159538 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 104 bits (114), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAG--AA 45185 ||| |||| ||||| || ||||||||||| || || |||| | ||| | | | | Sbjct 150422 CAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT--CAGACAATGTGCGGCCA 150479 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || ||||| ||||| || ||| | || || || || ||||| || ||||| ||||| || Sbjct 150480 TCTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTG 150539 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| |||||| ||| | ||| | || || || | || ||||| | ||| | Sbjct 150540 TCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATG 150599 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | |||||| ||||| |||||||| Sbjct 150600 GTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 ||||||||||| | || || | || || || ||||||||||| || || ||||| | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCA--G 145823 Query 45174 ACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 || | | | ||| ||||||||||| || ||| | || || || || ||||| || | Sbjct 145824 ACAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAG 145883 Query 45232 GAATGCCTTCTTTATCTTGAATTTTT 45257 |||| ||||| || ||||| |||||| Sbjct 145884 GAATACCTTCCTTGTCTTGGATTTTT 145909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451989668154200