Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq451 116 4e-21 seq383 111 2e-19 seq565 105 8e-18 seq161 86.0 7e-12 >seq451 Length=246926 Score = 116 bits (128), Expect = 4e-21 Identities = 168/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || |||| ||||||||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || | ||||| || ||||| ||||| || |||||||||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 46487 ACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | ||| |||||| ||||| ||| | | ||| | ||||| | ||| | Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCG--ATAGTGTCCGAGGGTTCGA 37946 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCA 46599 | || | |||||||| |||||||| || ||||| ||||| || ||||| ||||| Sbjct 37947 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTGCA 38001 >seq383 Length=330124 Score = 111 bits (122), Expect = 2e-19 Identities = 166/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 46362 ATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGT 46421 || ||||||| | | ||| ||||||| ||| | ||| |||||||||||||| |||| Sbjct 43955 ATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGT 43896 Query 46422 CGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 | || | ||||| | || || |||||||| ||||| || || |||||||| || || | Sbjct 43895 CTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTG 43836 Query 46482 CCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGAT 46540 || | || || |||| | ||| || | ||| | || || | | || || | | Sbjct 43835 GAGGAATGCCTTCTTTGT-CTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGT 43777 Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | ||||||||||| || |||| ||||| |||||||| ||||| Sbjct 43776 TCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 105 bits (116), Expect = 8e-18 Identities = 155/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 |||||| |||| ||||||||| || || || || ||||| || || | ||||| | Sbjct 150647 ACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 150706 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||| || || || || ||||| ||||| ||||| | || | | ||||| Sbjct 150707 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 150766 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 ||| ||| || | ||| | ||| | | || || |||||| || |||| |||| Sbjct 150767 GTCTTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGA 150825 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| || |||| ||||||||||| |||||||| Sbjct 150826 TGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 104 bits (114), Expect = 3e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| |||||| || |||||| || ||||| || ||||| | ||||| |||| || Sbjct 159379 ACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCC 159438 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||||||||| || ||||| || |||||||| | || | | |||||||| Sbjct 159439 AGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGA 159498 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| || | | | | || || || ||| || |||| ||||| |||||| Sbjct 159499 ATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTG 159558 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || | ||||| || |||||||||||||| Sbjct 159559 CCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 46380 GCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGT 46439 |||| || | ||||||||| |||||||| || ||||| || || | ||||| | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 46440 CGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGT 46499 | || | ||| ||||| ||||| || || ||||| ||||| | || | | ||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 46500 CCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 | ||| || | ||| | ||| | | || || | ||| || |||| |||||| Sbjct 150541 CTTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATG 150599 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||||| || |||| ||||||||||| ||||||||| Sbjct 150600 GTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 >seq161 Length=579164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| || ||||||||| || || || || |||| ||| ||| | || || Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | || || || ||||| ||||| || || || || | || | || || || ||| Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | |||||| | || || |||| || || |||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || || ||||||||||| ||||||||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565221478175400