Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq383 134 1e-26 seq565 131 1e-25 seq451 120 2e-22 seq161 100 2e-16 >seq383 Length=330124 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| | |||||||| | || ||| ||||| |||||||| || | Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| |||| |||| || || ||| |||||||||| ||||| ||||| | || Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | |||||||||||| |||||| ||||| || | | || || | | ||| || Sbjct 43831 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || |||||||| || ||||||||||| |||||||||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 Score = 127 bits (140), Expect = 1e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || ||||||||||| || ||||||||||| ||||| ||||| |||||||| | Sbjct 43723 GCCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGA 43664 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | || |||| |||||||| || || |||||||||||||||||||||| | || Sbjct 43663 AAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGG 43604 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| ||||| || | | ||||| | || || Sbjct 43603 GATTCCTTCCTTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAAC 43544 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || ||||| || || || || || |||||||||||||| Sbjct 43543 CTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq565 Length=193464 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || ||||||||||| || || || || ||||||||||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || |||| ||| || ||| ||||||| ||||| ||||| || | || Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| || || |||| || ||| || || |||| ||| Sbjct 159480 AATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATA--GTATCTGACGGTTCA 159537 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||||||| || ||||| || ||||| |||||||||||||| ||||| Sbjct 159538 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 116 bits (128), Expect = 3e-21 Identities = 165/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||||||| ||| |||||| ||||| || ||||| | | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| | || ||||| ||||| || |||| || |||||||| || || | || Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| |||||| ||||| | ||| || || || | ||| | Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATA--GTATCCGACGATTCTA 150813 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | |||||||| || ||||| || || |||||||| || || || |||||| Sbjct 150814 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 114 bits (126), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 39506 GCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCAT 39565 ||| ||| |||||||| ||| ||| |||||||| || ||||| | ||| ||| ||| Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 39566 CGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGT 39625 | ||||| ||||| || | |||||||||||||| || || | || | ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 39626 CGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 | |||||| ||||| | ||| || || || | ||| || |||||||| || Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATA--GTATCCGATGGTTCTACTTCCAAAGTGAT 150598 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || |||||||| || || || ||||| Sbjct 150599 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || ||||||||||| || || || || ||||| ||||||| Sbjct 158904 GCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 158963 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || ||||||||||| || |||| || ||||| || ||||| | ||| Sbjct 158964 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159023 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| || | || | | || || | || || Sbjct 159024 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGAC 159083 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || ||||| || |||||||| || || ||||| ||||| || |||||| Sbjct 159084 TTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || ||||||||||| || || || || ||||| ||||||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| |||| | || ||||||||||| || |||| || ||||| || ||||| | ||| Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCAC 39671 | ||||| || || ||||| || | || | | |||||| | || || Sbjct 159252 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || || || || || || ||||| ||||| || |||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 93.3 bits (102), Expect = 3e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | |||||||||||| || | ||| ||| |||||||| || ||||| | | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| ||||||||||| || | |||||||||||||| || || | || Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA 39643 | ||||| ||||| |||||| ||||| Sbjct 145886 ATACCTTCCTTGTCTTGGATTTTTGCTTTAA 145916 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || |||||||| || ||||||||||| || || || || ||||| ||||| | Sbjct 156479 CCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAT 156538 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| |||| | || ||||||||||| || |||| || ||||| || ||||| | ||| Sbjct 156539 AAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 156598 Query 39613 ACGCCTTCTTTGTC 39626 | ||||| || || Sbjct 156599 ATTCCTTCCTTATC 156612 >seq451 Length=246926 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||||||||||| || | ||| || ||| ||||||||| ||||||||||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| |||||||| || || | ||||| || || ||||| || | || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | || |||||||| | || || | || || ||| || ||||| | | ||| | Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATA--GTGTCCGAGGGTTCGA 37946 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| || || || ||||||| |||||||| || |||||||| Sbjct 37947 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq161 Length=579164 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| |||||||| ||||| || || |||||||| |||||||| | Sbjct 362224 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGAT 362283 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| ||||||||||| || | ||||| ||||| || ||||| | || Sbjct 362284 AAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGA 362343 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||||||| || | | |||| | || | || || || ||||| | || Sbjct 362344 ATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATA--GTGTCGGAAGGCTCA 362400 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||||||||| ||||| || || | |||||| || || || ||||| Sbjct 362401 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347359460607035