Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq357 163 3e-35 seq565 122 9e-23 seq383 118 1e-21 seq451 113 5e-20 >seq357 Length=326794 Score = 163 bits (180), Expect = 3e-35 Identities = 379/571 (66%), Gaps = 8/571 (1%) Strand=Plus/Plus Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 |||||| ||| | |||||| || ||||| || ||||| || || |||||||| || Sbjct 32191 GCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACAGTGCAAGCCTTC 32250 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 || | || || | ||| || ||| || || || ||||| | || ||||| || || Sbjct 32251 ATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCCACGTTTCTTTAG 32310 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||||||||| | ||||| || || |||||| | || |||||||| |||||||| | Sbjct 32311 CCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGCAGCGAAAGCTAT 32370 Query 133041 CAGGCGCTCGCCGAACGTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || || ||||| | || | | || | ||||| || |||||||| | Sbjct 32371 AACACGTTCACCGAAATTAGCCGAATGCGATGAT----ATCCAAGCTAGTGCCCATTCCG 32426 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCG 133156 |||| | || || | ||||| || || ||||| || || | | || |||| | Sbjct 32427 CCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTTTTCTTTCT 32486 Query 133157 AGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGG 133216 | | || || ||||| || |||||||||||||||||| || ||||||| Sbjct 32487 CATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATTTTCCATGG 32546 Query 133217 CGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCT 133276 | |||||||| || |||||||| || || ||| | || || ||||| | || || | Sbjct 32547 CAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGAAAATCGTT 32606 Query 133277 CGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGA 133336 | || | ||| || || || || || ||| || || ||||| |||| ||||| | Sbjct 32607 CCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACGTGTGAAA 32666 Query 133337 TGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 | ||||| || ||| | | || || | ||| ||| | || || || ||||| | Sbjct 32667 TAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGAGAGGTCAA 32726 Query 133397 CCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 | || || | |||||||| || || || || Sbjct 32727 CTTCTTCTGCAGTCCAAAAAGATGCTTCCGC 32757 >seq565 Length=193464 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || || ||||||||||| | || || || | | Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | ||||| |||||| |||||||| ||||| || || ||||| | |||| Sbjct 150575 GGATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACC 150517 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| | |||| ||| ||||||||| |||| || | ||||| | || |||| Sbjct 150516 AACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACA 150457 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGT 38452 |||| ||||||||| | || ||||||| || Sbjct 150456 ACATACAAAAGGAATCCACATTGCATTTAGT 150426 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| | || || ||||||||||| | || || || | | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| |||||||| ||||| || || ||||| | ||||| Sbjct 150802 GATACTATCGAAAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150744 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | || | || || |||||| |||| |||| ||||| | || ||||| Sbjct 150743 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 150684 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || || ||| | || |||||||||| ||||| Sbjct 150683 CATACAGAAAGAATCCACATTGCATTTGGTATTGCGT 150647 Score = 107 bits (118), Expect = 2e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| ||||||||||||| ||||||||||| | || |||||||| ||||| | || || Sbjct 159596 TTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTT 159537 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | | || | | ||| |||||| || || | ||||| || || ||||| Sbjct 159536 GAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCT 159477 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | ||||| || || | |||| || ||||| || ||||| |||| |||||| | | Sbjct 159476 CCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCC 159417 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || || || || ||||| | || |||||||||| || ||| || | || ||| Sbjct 159416 GATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGC 159360 Score = 102 bits (112), Expect = 8e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 ||||| |||||| |||||||| ||||| || || ||||| | ||||||||||| | | Sbjct 145921 AAACG-TTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAACAGCGTTTAA 145863 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 ||| ||| |||||||| |||| || | ||||| | || |||||||| ||||||| Sbjct 145862 TTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGG 145803 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || || ||||| |||||| Sbjct 145802 AATCTACTCTTCACTTGGTACTGCGT 145777 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || |||||| | || Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||||| | || || || ||||| ||| | || ||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || | || | || |||||||| |||| |||| |||||| | ||| ||||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || || ||||| | || |||||||||| || ||| || | || ||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGGC 158904 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || || ||||| |||||| | || || ||| | Sbjct 151093 AAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCCA 151034 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | ||||| ||||| | || |||||||| | || | || Sbjct 151033 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGAT 150974 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| || | || | || ||||||||| |||| | | ||||| ||| |||||| Sbjct 150973 CAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTAC 150914 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || ||| |||| || |||||||| | |||||| | || ||| Sbjct 150913 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 150863 >seq383 Length=330124 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| | || || ||||||||||| | || || || || | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| |||||| |||||| | |||||||| || ||||| | || || Sbjct 43784 GATACTATTGAGAACG-TTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 43842 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| | |||| || || || |||||||| || | |||||| | ||||| || Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 43902 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | ||||| ||||||||| | ||| Sbjct 43903 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGT 43939 >seq451 Length=246926 Score = 113 bits (124), Expect = 5e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || | |||| ||| || || || |||| || | ||||| | ||| || Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | || | ||| | ||| |||||||| |||| || Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 37769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500157826076800