Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq49 109 6e-19 >seq49 Length=1174911 Score = 109 bits (120), Expect = 6e-19 Identities = 343/517 (66%), Gaps = 16/517 (3%) Strand=Plus/Plus Query 159271 TGTGATATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAG 159330 ||||| |||||||| | |||| ||||| || ||||| || | || | || || || Sbjct 166991 TGTGAAATCACAGGTTATGATAAAATATCGTTTCAACCCAATTCTGGTGCTCAAGGCGAA 167050 Query 159331 TATGCAGGACTGTTAGCAATCCA-AGCATACCATCAAGGATCAGGA-GATGATAAAAGAA 159388 ||||| || || || || | ||| ||||| | || ||| | || | | ||| Sbjct 167051 TATGCGGGCCTACGGGCCATACGCAGC-TACCA-CGAGCATCGTAAAGAAGGGCACCGAA 167108 Query 159389 ATGTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAG 159448 |||| ||| | || || || |||||||| || |||||||| || || ||||| | Sbjct 167109 ATGTTTGTCTAATTCCCATTTCTGCACATGGTACAAATCCTGCTTCTGCTCAAATGGCCG 167168 Query 159449 GGATGAAAGTTGTAGGTGTCAAGTGTGATGA-TGATGGCAACATAGACATCAAAGATCTA 159507 | |||||||||| | | | | || | | |||||| | ||||||||| | |||| Sbjct 167169 GCATGAAAGTTGAACCTAT-ACGTATACTTTCTGATGGAAGCATAGACATGGCACATCTG 167227 Query 159508 GAGAAGAAAGCAATCATGAATA--CATTTGAACTGTCATGTATTATGATTACATATCCAT 159565 | |||||| || |||| | || | | || |||||| | ||| ||||||| || | Sbjct 167228 CGCGATAAAGCA-TC-TGAACATGCAAGTAATCTTTCATGTGTAATGGTTACATACCCTT 167285 Query 159566 CTACACATGGTGTATTTGAA---ACAAACATCAGACAGATATGTAAGATTGTTCATGAGA 159622 | || || || || ||| |||| | | |||| | || | || | ||| Sbjct 167286 CAACTATGGGCGTTTTCGAAGAGACAATTA-CGGACA--TTTGCGACCTTATACATCGCC 167342 Query 159623 ATGGTGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAAC 159682 |||| || || || ||||| ||||| || ||| | || ||||| || ||| || | Sbjct 167343 ATGGAGGCCAAGTGTATCTGGATGGCGCCAATATGAACGCACAAGTGGGTTTATGTCGTC 167402 Query 159683 CATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCAC 159742 | | || ||||| || || | |||| |||| || ||||||||||| || ||||| | Sbjct 167403 CTGGCGATTATGGAAGTGACGTTTCTCATTTAAATTTGCATAAGACATTTTGCATTCCTC 167462 Query 159743 ATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 | || || || || || ||| | || |||||||| || Sbjct 167463 ACGGCGGCGGCGGCCCGGGCATGGGACCTATTGGAGT 167499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588033595217200