Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq383 158 3e-33 seq565 147 5e-30 seq161 143 6e-29 seq451 132 1e-25 >seq383 Length=330124 Score = 158 bits (174), Expect = 3e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || || || || || ||||| ||||| || || | |||| || | |||||||| ||||| Sbjct 43926 TGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAG-GTGCGGCCATCTTCCAGCTG 43868 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | || ||||| |||||||||||||||||||||||||||||||| Sbjct 43867 CTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 43808 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | || ||||||||||| || ||||| ||| ||||| | || | || || ||||| Sbjct 43807 TGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGT 43748 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||| || | ||||| Sbjct 43747 CAAAGTTTTTACAAAGATCTGCAT 43724 Score = 100 bits (110), Expect = 6e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| |||||||| || || || ||||| | |||||| | ||||| || | ||||| || Sbjct 43693 AGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCC 43634 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | || || || ||||| || || ||||| || ||||||||||| || Sbjct 43633 AGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCTTT 43574 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || |||||||| ||||| || || || || | || | || || || ||||| || Sbjct 43573 AACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGT 43514 Query 195123 TTTTACGAACACTTGCATTT 195142 || ||||| | ||||||| Sbjct 43513 CTTCACGAAGATCTGCATTT 43494 >seq565 Length=193464 Score = 147 bits (162), Expect = 5e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||||||||||| |||| || | || ||||| | || || || Sbjct 159163 GTTGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGTCCGTCTTCCAATTGTTTGCC 159221 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | |||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 159222 AGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTT 159281 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 |||||||||||| ||||| ||| || ||||| | ||| | ||||| || ||||| || Sbjct 159282 GACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCCAGTCAATGT 159341 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 159342 TTTGACGAAAATTTGCAT 159359 Score = 136 bits (150), Expect = 9e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || ||||| || |||||||| | | || | |||||||| | ||| || || Sbjct 150438 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 150497 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | || ||||||||||||||||| ||||| |||||||| |||||| || Sbjct 150498 GCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 150557 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || ||||| ||| ||||| | || | || ||||| ||||||||| Sbjct 150558 ACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTT 150617 Query 195124 TTTACGAACACTTGCATT 195141 || || || | ||||||| Sbjct 150618 TTAACAAATATTTGCATT 150635 Score = 134 bits (148), Expect = 3e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||||||||||| |||| || | || ||||| | || || || Sbjct 158935 GTTGACTCCTTCTGAATATTGTAATCGGACAAG-GTGCGTCCGTCTTCCAATTGTTTGCC 158993 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || ||||| | |||||||| ||||| || || ||||| || ||||||||||| ||| Sbjct 158994 AGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTT 159053 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 ||| ||||||||||| || ||| || ||||| | || | || || || ||||| || Sbjct 159054 GACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGT 159113 Query 195123 TTTTACGAACACTTGCAT 195140 ||| ||||| | |||||| Sbjct 159114 TTTGACGAAAATTTGCAT 159131 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| ||||| || || |||||||| | | || | || ||||| | ||| || || Sbjct 150666 GTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCA 150725 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || ||||||||||||||||| ||||| |||||||| |||||| || Sbjct 150726 GCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTA 150785 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || ||||| ||| ||||| | || | || ||||| ||||||||| Sbjct 150786 ACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTT 150845 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 150846 TTAACAAATATTTGCAT 150862 Score = 123 bits (136), Expect = 6e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||| ||||||| |||| || | || ||||| || ||||| || Sbjct 159391 GTTGACTCCTTCTGAATATTATAATCGGACAAG-GTGCGTCCGTCTTCCAGTTGCTTGCC 159449 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||| |||||||||||||| ||||| ||||||||||| || || Sbjct 159450 GGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCTTT 159509 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || || || ||| ||||| | || | || || || || || || Sbjct 159510 AACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGT 159569 Query 195123 TTTTACGAACACTTGCATTT 195142 ||||||||| | |||||||| Sbjct 159570 TTTTACGAAGATTTGCATTT 159589 Score = 107 bits (118), Expect = 4e-18 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || ||||| || |||||||| | | || | |||||||| | || Sbjct 145789 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAATTG 145848 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| || | || ||||||||||||||||| ||||| |||||||| ||||| Sbjct 145849 TTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGATTTT 145908 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGA 195083 | || ||||| || || || ||||| Sbjct 145909 TGCTTTAACGTTTTCGATAGTATCCGA 145935 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | || || || || ||||| ||||| ||||| || | || || | |||| | Sbjct 150879 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTT 150938 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| || || || ||||| | |||||||| ||||| || | || ||||| ||| Sbjct 150939 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCT 150998 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || |||||||| || || || || || || | ||| | || Sbjct 150999 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 151058 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| ||||| || || ||||| | ||||||| Sbjct 151059 TTTCCAGTCAATGTCTTCACGAAGATCTGCATTT 151092 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| || |||||||||||||| | | ||| | || ||||| | || || || Sbjct 156509 GTCGACTCCTTCTGAATATTGTAATCAGATAAAGTGCGTCCGTCTTCCAATTGTTTGCCA 156568 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | |||||||| ||||| || || ||||| || ||||||||||| |||| Sbjct 156569 GCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTG 156628 Query 195064 ACGTTCTCAATGGTGTCCGAA 195084 || ||||||||||| || ||| Sbjct 156629 ACATTCTCAATGGTATCGGAA 156649 Score = 100 bits (110), Expect = 6e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 |||||||| ||||| || || ||||| || ||||||||||| |||||| ||||||||| Sbjct 158779 CGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATG 158838 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || || ||| ||| ||||| | || | || || || ||||| ||||| ||||| | | Sbjct 158839 GTATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATT 158898 Query 195136 TGCAT 195140 ||||| Sbjct 158899 TGCAT 158903 >seq161 Length=579164 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| || || ||||| | | ||| | ||||||||| | || ||||| Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| |||||||||||||||||||| || |||||||| |||| Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| ||| || ||||| | |||| || || || || | |||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 195124 TTTACGAACACTTGCATTT 195142 || || || | |||||||| Sbjct 362434 TTAACAAAAATTTGCATTT 362452 >seq451 Length=246926 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| ||||| || | ||||| |||||||||||||| ||||||| | || | ||||| Sbjct 37783 CAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCATC 37842 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||| | ||||| || ||||| || | |||||| ||||| || ||||| || |||||||| Sbjct 37843 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 37902 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 ||||| || || || || || || |||||||| ||| || ||||| || | || Sbjct 37903 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 37962 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || | |||||||| || | ||||| Sbjct 37963 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109447554516965