Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq565 102 5e-17 seq383 96.9 2e-15 seq451 87.8 1e-12 >seq565 Length=193464 Score = 102 bits (112), Expect = 5e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34770 AAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCA 34829 |||||||| || | ||| ||||||||||||||| ||||| || || | || ||| Sbjct 150879 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCATTT 150938 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 |||| |||||| || ||||| || | ||||| || ||| | || || ||||| || || Sbjct 150939 TCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTATCT 150998 Query 34890 CTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGG 34947 ||| || ||| || || || || | || | |||||| || | ||| || | Sbjct 150999 TGAATTTTAGTTTTAAC--ATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAG 151056 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||||| || | |||||||| ||||||||||| || Sbjct 151057 TTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTT 151093 >seq383 Length=330124 Score = 96.9 bits (106), Expect = 2e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| |||||||| | || |||| |||| || ||||| ||||| Sbjct 43686 TCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAA 43627 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 |||| || ||||| ||| |||| | || ||||| || ||| || ||| || || Sbjct 43626 ATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGAATTTTAGCTTTAAC--AT 43569 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | |||||| || | || || ||||| || || | ||||||| Sbjct 43568 TCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCA 43509 Query 34969 CAAAGATCTGCATATT 34984 | ||||||||||| || Sbjct 43508 CGAAGATCTGCATTTT 43493 >seq451 Length=246926 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 ||| || | ||| | ||| || | || | |||| |||||| ||||| ||||| || || Sbjct 37768 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 37827 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 | | || |||| |||| || ||||| || || || | |||||||||||| | || Sbjct 37828 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 37887 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | ||||| ||||| |||||| ||| || | | || | || || || || Sbjct 37888 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 37947 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 37948 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324624124249560