Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq357 295 8e-75 seq680 104 3e-17 seq273 93.3 5e-14 seq3 87.8 2e-12 >seq357 Length=326794 Score = 295 bits (326), Expect = 8e-75 Identities = 478/688 (69%), Gaps = 0/688 (0%) Strand=Plus/Plus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| |||||| ||||||| ||||||||||| ||| ||| || ||||||| | || Sbjct 32059 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 32118 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | || ||| | ||| |||||| ||| | || |||||| | | ||| | | Sbjct 32119 TGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCAA 32178 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 ||| ||||| | || | | | |||| |||||||| ||| ||||| ||||| Sbjct 32179 AATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCACA 32238 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 || || |||||||| | ||||| ||||||||| || ||||| |||||||||| || Sbjct 32239 GTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGAACGTTAAACCTGGCATTATTCC 32298 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| || | ||||||||| | || || ||| |||||| |||||||| || || Sbjct 32299 ACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACGGC 32358 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGT 37369 || || |||| || |||| ||||||| | | || || ||||| | || Sbjct 32359 AGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAATGCGATGATATCCAAGCTAGTGC 32418 Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| ||||| || ||||| ||||| || || || ||| | | || Sbjct 32419 CCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGATATTCCTT 32478 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| |||| | ||||| || || || ||||||||||||||||| ||||| | ||| Sbjct 32479 TTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGTACATT 32538 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 ||| || || || ||||| |||||||| || | ||||| | || |||||| || | | Sbjct 32539 TTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCTTGGGA 32598 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| | | |||| || |||||||| || ||||| || ||||| ||||| | ||| Sbjct 32599 AAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAAC 32658 Query 37610 ATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGA 37669 | | |||||||| | ||| |||| ||| |||||||| | |||||||| || Sbjct 32659 GTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATATCTTTAGA 32718 Query 37670 TAAATCAACTTCATCAACGGTCCAAAAA 37697 | |||||||| || | ||||||||| Sbjct 32719 GAGGTCAACTTCTTCTGCAGTCCAAAAA 32746 >seq680 Length=148009 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 16540 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 16481 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 ||||||||||||||||| | || ||||| ||||| ||||| Sbjct 16480 GAATATGGATTGGAGATCTTTGACCCAAGTTAAAGAGTTAGG 16439 >seq273 Length=439812 Score = 93.3 bits (102), Expect = 5e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 10483 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGC 10424 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAA 153380 ||||||||||||||||| | || ||||| ||| Sbjct 10423 GAATATGGATTGGAGATCTTTGACCCAAGTCAAA 10390 >seq3 Length=2711279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | ||||||| Sbjct 2065517 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATCTGGGAAGTGT 2065576 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAAT 153384 |||||| |||||||||| | || |||| ||||||| Sbjct 2065577 GAATATGAATTGGAGATCTTTGACCCAAGGCAAAGAAT 2065614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592299067515800