Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq383 181 8e-41 seq451 168 5e-37 seq565 163 2e-35 seq161 152 4e-32 seq17 104 2e-17 seq226 96.9 3e-15 >seq383 Length=330124 Score = 181 bits (200), Expect = 8e-41 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | |||||| || ||||| || |||||||| ||||| ||||| || || | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| |||||||| ||||| || || ||||||||||| || ||| Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| |||||||||||| ||| || | || | ||| || || | ||| ||| Sbjct 43830 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 43771 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || | ||||| ||||| || || |||||||||||||| ||||||||| Sbjct 43770 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 Score = 163 bits (180), Expect = 2e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| | |||||||| | || || ||||| ||||| || ||||| | | ||| | | Sbjct 43713 AAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGG 43654 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||||||||| || ||||| || |||||||| ||||| ||||| || ||||| Sbjct 43653 CCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCC 43594 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | ||||||||||| || || || | |||| Sbjct 43593 TTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTG 43534 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | |||||||| || || || || || || |||||||| Sbjct 43533 ATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq451 Length=246926 Score = 168 bits (186), Expect = 5e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| ||||| || || | ||| | || ||||||||||| ||||| ||||||| Sbjct 37768 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 37827 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | |||| ||||||||||| || || || ||||| || || || ||||| || Sbjct 37828 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 37887 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| || Sbjct 37888 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGAC 37947 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 37948 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq565 Length=193464 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || |||||||| ||||| |||||||| | Sbjct 150634 TTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAG 150693 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | | || ||||| || || || ||||| |||||||||||||| || || | Sbjct 150694 ACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAG 150753 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || ||||| |||||| ||| || |||| | ||| || |||| ||| | Sbjct 150754 GAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 150813 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| | ||||| ||||| || || |||||||| |||||||| |||||| Sbjct 150814 CTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 152 bits (168), Expect = 4e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || |||||||| | || ||||| |||||||| |||||||| | | || | | |||| Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 150482 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||| || || || || || || ||||||||||| || || ||||| ||||| || ||| Sbjct 150483 TCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150542 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || |||||| ||| || |||| | ||| || || | ||| ||||| | ||||| ||| Sbjct 150543 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTT 150602 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || |||||||| |||||||| ||||| Sbjct 150603 TTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||||||| ||||| || || |||||||| || || ||||| || | || || | | Sbjct 150873 AAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGG 150932 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 ||| ||||| || || || ||||| |||||||| |||||||| || || | || ||| Sbjct 150933 CCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCT 150992 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | ||| || || | || || || | ||| Sbjct 150993 TTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTG 151052 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || || || || || |||||||| Sbjct 151053 ATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCAT 151090 Score = 134 bits (148), Expect = 1e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| ||| ||||| | ||| || || || || ||||||||||||| | || | | Sbjct 158916 ACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCC 158975 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| || || ||||| |||||||| |||||||| || || || ||||| || Sbjct 158976 GTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTT 159035 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || ||| | || | || || || | || ||||| | ||||| Sbjct 159036 ATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGAT 159095 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || || || ||||| || || || |||||| Sbjct 159096 GGTTTTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 125 bits (138), Expect = 6e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| || ||||| | ||| || || || || ||||||||||||| | || | | Sbjct 159144 ACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCC 159203 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || |||||||| || || ||||| |||||||| |||||||| || || || ||||| || Sbjct 159204 GTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTT 159263 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 |||||||||||| || || | || | ||||| || | || ||||| | |||| Sbjct 159264 ATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGAT 159323 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || ||||| || || ||||| || || || |||||| Sbjct 159324 GGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 113 bits (124), Expect = 4e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || ||||| |||||||| |||||||| |||||||| | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||||||| || || || || || ||||||||||| || || ||| Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || ||||| || ||||| |||||| ||| || |||| | ||| || || Sbjct 145886 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 145935 Score = 102 bits (112), Expect = 6e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||| || ||||| | || || || || || ||||||||||| | | ||| | Sbjct 156488 AAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGATAAAGTGCGT 156547 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || |||||||| || || ||||| |||||||| |||||||| || || || ||||| Sbjct 156548 CCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCC 156607 Query 101372 TTATCTTGAATTTT 101385 |||||||||||||| Sbjct 156608 TTATCTTGAATTTT 156621 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 |||||| |||||||| || || || ||||| |||||||||||||| || ||| | || Sbjct 158775 CAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTC 158834 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || || || | ||| ||||| | ||||| ||||| || || || ||||| || || Sbjct 158835 AATGGTATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAA 158894 Query 101461 TATCTGCATG 101470 || |||||| Sbjct 158895 AATTTGCATG 158904 >seq161 Length=579164 Score = 152 bits (168), Expect = 4e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || |||||||| || ||||| | | ||| | |||| ||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 ||||| ||||| || || |||||||| |||||||| || ||||||||||||||||| ||| Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | |||||| || | || ||||| | ||| | |||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| ||||| || ||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 >seq17 Length=1967559 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 101238 CATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAAT 101297 |||| || || |||||||||||| ||||| || || | | |||||||| || || | Sbjct 595101 CATTACCGCCAAGTAAACGTAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGT 595042 Query 101298 CGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGG 101357 | | || | ||| || || ||||| || ||| | ||||| || |||||| | Sbjct 595041 TCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTG 594982 Query 101358 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTT 101417 | ||||| || || ||||| ||||| || ||| | |||| | ||| || | || || Sbjct 594981 GTGGAATACCGTCCTTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTT 594922 Query 101418 CCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || | ||| | || ||||| ||||| ||||| ||||| |||||||| Sbjct 594921 CGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGCAT 594870 >seq226 Length=508163 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| |||| | ||||| |||| ||||| | ||||| || ||| || ||| | | Sbjct 75282 AAACGCAAAATCACCTGAAGAGTAGCGTCTTTCTCAATATTATATTCGAAGAGAGTACGG 75341 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 | || ||||||||||| || |||||||||| | ||| ||||| | ||||| |||||| Sbjct 75342 TCGTCTTCCAATTGCTTTCCATCAAATATCAAGCACTGATGATCTAGAGGAATACCTTCT 75401 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGA 101412 || |||| ||||||| || | | || || |||||||| Sbjct 75402 TTTTCTTCAATTTTTGCCTTGATATATTTAACGGTGTCAGA 75442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396266833005015