Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq383 118 8e-22 seq565 114 1e-20 seq451 113 3e-20 seq414 91.5 1e-13 >seq383 Length=330124 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || ||||||||||| ||||| || ||||| ||||| || || || | | || Sbjct 43941 AGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGG 43882 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||||||||||||||| || | ||||||||||| | |||| ||| || Sbjct 43881 CCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCT 43822 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCAC-AGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||| ||||| |||| | | || || || || | || || || | || Sbjct 43821 TTGTCTTGAAT-TTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGT 43763 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || ||||||||||||||||| |||||||| Sbjct 43762 GATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||| |||||||| | ||| ||||| || || ||||||||||| | | || Sbjct 150645 AGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGG 150704 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||||||| || || ||||| |||| |||||||| || | |||| || ||| Sbjct 150705 CCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 150764 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || |||| || || |||| || Sbjct 150765 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTG 150824 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| ||||||||||| ||||| || ||||| Sbjct 150825 ATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 48553 GCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612 |||| || ||||| | ||| || ||||| || ||||||||||| | | || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 | |||||||| || || || || || | |||||||| || | |||| || ||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 48673 CGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCG 48732 | || ||| ||| || | | || || || | || || |||| || || | Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 48733 TTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||||||||||| ||||| || ||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 >seq451 Length=246926 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||||||| | ||||| ||| |||||||||||||| ||||| || | | ||| | Sbjct 37781 CGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCA 37840 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || || || |||| ||| || || || | |||| ||||| ||| Sbjct 37841 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTG 37900 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||||||| | | || || || | || ||||| | || || Sbjct 37901 TCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 37960 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 37961 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq414 Length=269728 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || || | || ||||| ||||| ||||| | ||| || || | |||| Sbjct 242449 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCGCCACGCTTAATATCAAAA 242508 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || |||||||||||||| || || || |||| || || | |||||| ||||| ||| Sbjct 242509 TCAACATCGGAATGATTGAAAAGAACAACACCCAAATTGCCTCGGTAATCTTCATCAATC 242568 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 |||||||| ||||| ||||| || | ||| || | || || || || || | ||| Sbjct 242569 ACACCAGCTCCCACATCGATAAAATTCTTCCAAGCCAAGCCGGATCGTGGTGCTACGCGA 242628 Query 9247 CCGTA 9251 ||||| Sbjct 242629 CCGTA 242633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380926480788585