Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq565 93.3 4e-14 seq161 91.5 1e-13 seq383 87.8 2e-12 >seq565 Length=193464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || ||||||||||| || ||| || ||||| Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||||| || || || ||| | ||| ||||||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| ||||||||||||||||| || || ||||||| || Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || |||| |||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGT 158923 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || |||||||| || || || ||||| ||| ||| || ||||| Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | ||||| ||||| || || || ||| | ||| ||||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || | | |||||||| ||||||||||||||||| || || ||||||| || Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || || || || |||| |||| Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGT 159151 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| ||||| || || || |||||||| || ||| ||||| || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | || ||||||| ||||| || || | || ||| || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||| | | || || || |||||||| ||||||||| || || | ||||| || Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| ||||| ||||| || |||| | ||||| Sbjct 150455 CATACAAAAGGAATCCACATTGCATTTAGTATT 150423 >seq161 Length=579164 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 28549 TAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAAC 28608 ||||||||||||| ||||| ||||| | || || ||||| ||||| ||| || | Sbjct 362455 TAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 362396 Query 28609 CTTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAG 28668 |||| || || | | || ||||| ||||| || ||||| || | || || Sbjct 362395 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 362336 Query 28669 ATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 28728 ||||||| | | || || || || ||||||||||||||| ||| | | |||| Sbjct 362335 ATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATT 362276 Query 28729 ATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGATAAT 28786 ||||||| ||||| || || || ||||| ||||| | | | || || || ||||| Sbjct 362275 ATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGTATAAT 362218 >seq383 Length=330124 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||||||||| || || ||||||||||| || ||| ||||| || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 28614 GAGACGGTGGCCGATC--TCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | || | | ||||||||| || |||||||| || | || ||||| Sbjct 43784 GATACTATTG-AGAACGTTAAAGCAAAAATTC-AAGACAAAGAAGGCATTCCTCCAGATC 43841 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 ||||| | | || ||||| || || || |||||||| || || | || |||| Sbjct 43842 AACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA 43901 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 | || ||||| |||||||| || || |||| ||| | | || ||||| Sbjct 43902 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425392382832705