Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq151 123 1e-23 seq37 95.1 6e-15 >seq151 Length=588408 Score = 123 bits (136), Expect = 1e-23 Identities = 403/619 (65%), Gaps = 13/619 (2%) Strand=Plus/Minus Query 25922 TCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTC 25981 || ||| | | ||| ||||||||||| ||||||| ||| |||||||||| | || | Sbjct 333861 TCCACTCTTTTCATGAATAAATCTGGTATCCACAGAGCAAAAAATAAATCCCGTGCACGA 333802 Query 25982 ATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCCA 26040 ||| ||||| || ||||||||| | || |||||| || |||||||||| |||||| Sbjct 333801 TCTTCCTCTTTGCCCGTATTCTTTTTCAAGTC-AAGAAATTCGAAAATATCTGCGTGCCA 333743 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 |||||||| |||||||||| |||| | | || || ||| |||||| ||| || | Sbjct 333742 AGGTTCTAAGTAGATAGCAAGTGCACCTCTACGTTGTCTGCCATCTTGATGTACATAACA 333683 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCT 26160 ||| | ||||| || |||||| ||||| | ||| | || | || || || | Sbjct 333682 GGCAAGATTGTTGAAGACGCGCAACATAGGAACAAGACCATTCGATACGCCATTAGTACC 333623 Query 26161 ATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCA 26220 ||||| | ||| | | || || || ||| | | | || ||||| | | | Sbjct 333622 GGATATCTTCGTACCTTTTGCTCGTATGCAATGGACATTCAGAGCTATGCCACCCGTCGA 333563 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| | ||||| | || | | ||||| || | ||| || | Sbjct 333562 TTTGGAAATTTCAGCACATTGCCTTACAGCCTTAAAAATGCCATCAATGGAGTCTTCCGG 333503 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGT 26340 ||| ||| || ||||| || || | ||||| || |||| | | | |||||| || Sbjct 333502 CATCGTTAACAAGAAACAGGATGACAGTTGCGGGCGAATTGTAGCAGCACCAAATAAAGT 333443 Query 26341 CGGTGTAGCATGAGTATAATATCCTTCACTCA-AAGCTGTATAAGTTTCAAGAACTTCAT 26399 | | ||||||||| | || | || || || | |||||||||| | | || | | Sbjct 333442 TGAGGAAGCATGAGTGAAGTAACGCTCCGACATGAGAT-TATAAGTTTCGATAGCTGCCT 333384 Query 26400 CGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAA 26459 | |||| || || |||| || | | |||||| ||| || || || Sbjct 333383 CAATATCGTCGCCGTGAATGCCAATGGCGACACGCATTAACATATGTTGTGGCCGCTC-- 333326 Query 26460 TTACATTATTTTCC---GCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTCAATCCAA 26516 || ||||||| |||| ||| ||||||||| |||||| ||||| || |||| Sbjct 333325 ---CACAATTTTCCCATTAATCTTTAA-CAAATAAGACCGTTCTAATGTTTTGAAGCCAA 333270 Query 26517 AATAATCATGATTGAAATC 26535 || ||| | | ||||||| Sbjct 333269 AAAAATTGTAACTGAAATC 333251 >seq37 Length=1463180 Score = 95.1 bits (104), Expect = 6e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| | | ||| || | ||| || ||||||| |||||||||||||| | || | Sbjct 1100347 CTCTACTCTTTTCATGAAAAGATCCGGTATCCACAGAGCATAAAATAAATCCCGTGCACG 1100406 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAA-TCAAAAATATCTGAGTGCC 26039 ||| ||||| || ||||||||| | || | ||||| || || ||||||| |||| Sbjct 1100407 ATCTTCCTCTTTACCCGTATTCTTTTTCAAAT-TGAGAAATTCGAATATATCTGCATGCC 1100465 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 | || ||||| || ||||||||| || | |||||| |||||||| || || || | Sbjct 1100466 AAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAAC 1100525 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| | ||||| | |||||| ||||| Sbjct 1100526 GGGCAACATTGTTGAACAGACGCAACATAGGAAC 1100559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253032613999625