Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq161 170 3e-37 seq565 149 1e-30 seq451 145 1e-29 seq383 140 6e-28 seq17 109 1e-18 seq226 84.2 4e-11 >seq161 Length=579164 Score = 170 bits (188), Expect = 3e-37 Identities = 178/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||||||||| | | || ||||||| ||||| || | ||| || || ||||| || Sbjct 362220 TATACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATC 362279 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||||| || | ||| || |||||||| || || ||||| || | |||||||| || Sbjct 362280 CGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGG 362339 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || ||||||||||| || ||||||| || | |||| |||||| ||||||| ||| Sbjct 362340 AGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 362399 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||||| | ||| |||||||| || || || ||||| ||||| ||||||||||| Sbjct 362400 AACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 >seq565 Length=193464 Score = 149 bits (164), Expect = 1e-30 Identities = 177/240 (74%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | || || || |||| |||||| || | ||| || |||||| Sbjct 159351 AATTTGCATGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATT 159410 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||| ||||| || || | || || | ||| || ||||||||||| || | || || Sbjct 159411 ATAATCGGACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTG 159470 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| || ||||| || |||| ||| | |||| |||||||| || Sbjct 159471 GTCTGGAGGAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGA 159530 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | ||| |||||||| || |||| |||||||| || ||||||||||| Sbjct 159531 CGGTTCAACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 129 bits (142), Expect = 1e-24 Identities = 170/236 (72%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | | || | ||||| ||||||||| | ||||| || || Sbjct 150627 ATTTGCATTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTG 150686 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || || ||||| | || || || |||||||| ||||| || || | |||||| Sbjct 150687 TAATCAGACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGG 150746 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || ||||| ||||| | ||| | ||| |||||||| || Sbjct 150747 TCTGGAGGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGAC 150806 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| | ||| || ||||| || || | ||||| |||||||||||||| Sbjct 150807 GATTCTACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| || ||||| | ||| || | |||| ||| | ||| | ||||| ||| || Sbjct 150855 ATTTGCATGCCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTG 150914 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | || | || || || ||||| || ||||| || || | |||||| Sbjct 150915 TAGTCAGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGA 150974 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || | || ||||||||||| ||||| ||||| | ||| |||||||||||| Sbjct 150975 TCTGGTGGGACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGAT 151034 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | |||||| || | || |||||||| || || | || || || || || ||||||||| Sbjct 151035 GGCTCAACCTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 151094 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||| | ||||||||| | || || || || || || || || || | ||| || Sbjct 150425 TACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTC 150484 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 || ||||| || || |||||||| | |||||| || ||||| || ||||| || ||||| Sbjct 150485 CAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 150544 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | ||| |||||||| || | || ||||| | ||| || ||||| Sbjct 150545 GATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTT 150604 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||||| ||||||||||||||| Sbjct 150605 TCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 >seq451 Length=246926 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| ||| || | || ||||| ||||| | ||||| ||||||||| ||||| Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | | ||| || ||||| ||||| || ||||| |||| || || || || || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| || || || |||| ||||| |||| ||||| || || | || || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq383 Length=330124 Score = 140 bits (154), Expect = 6e-28 Identities = 140/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 ||||||||||| || || || | ||| || | || || |||||||||||||| | | Sbjct 43905 ATATTATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGC 43846 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || |||||||| ||||| ||||| | ||| | || ||||||| Sbjct 43845 TGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTA 43786 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 || || | || ||||||| ||| || ||||||||||| | ||||||||||| || ||| Sbjct 43785 TCCGAGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGC 43726 Query 193359 AT 193360 || Sbjct 43725 AT 43724 Score = 136 bits (150), Expect = 7e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| || || || | |||||| || | |||||| || ||||| || Sbjct 43725 ATGCCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCC 43666 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || ||||| ||||| ||||||||||| | ||| ||||| || Sbjct 43665 GAAAGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGC 43606 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| |||||||| ||||| | ||| | ||| |||||| || || | |||| Sbjct 43605 GGGATTCCTTCCTTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCA 43546 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || |||| ||| |||||||| || || | || || || || || |||||||| Sbjct 43545 ACCTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 >seq17 Length=1967559 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||||| | || ||| | | ||| ||||| || || |||||| |||| |||| Sbjct 595051 ATGTTATAGTTCGTTAGCGTGCAACTATCTTCTAACTGCTTGCCGGCATAAATCAATCGG 594992 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||| || || || || || ||||| || || ||| |||| || ||| ||||||| Sbjct 594991 CGTTGATTTGGTGGAATACCGTCCTTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTA 594932 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||| | || || |||| ||| | || || || |||| |||||| ||||| || ||| Sbjct 594931 TCGGTCGGTTCGACATCTAAAGTAAGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGC 594872 Query 193359 ATTTT 193363 ||||| Sbjct 594871 ATTTT 594867 >seq226 Length=508163 Score = 84.2 bits (92), Expect = 4e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 ||||| ||||| ||||||||| ||| | | || | || || ||||| ||||| Sbjct 75303 GTAGCGTCTTTCTCAATATTATATTCGAAGAGAGTACGGTCGTCTTCCAATTGCTTTCCA 75362 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 |||| || || | ||| ||||| |||| || |||||||| |||| ||||| | || Sbjct 75363 TCAAATATCAAGCACTGATGATCTAGAGGAATACCTTCTTTTTCTTCAATTTTTGCCTTG 75422 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA-CCTGTTAGCGT 193342 |||| | || || || ||||||||||| || | | || |||||| ||| | | || Sbjct 75423 ATATATTTAACGGTGTCAGAAGACTCAACCTCCAATGCAATGGTTTTATTCTG-TCGTGT 75481 Query 193343 TTTTACAAATATTTGCAT 193360 ||| ||| | |||| ||| Sbjct 75482 TTTAACATAAATTTCCAT 75499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899627466596400