Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq357 251 1e-61 seq383 161 1e-34 seq161 145 1e-29 seq565 132 7e-26 seq17 114 2e-20 >seq357 Length=326794 Score = 251 bits (278), Expect = 1e-61 Identities = 497/729 (68%), Gaps = 17/729 (2%) Strand=Plus/Plus Query 17971 TAATTCGTATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATT 18030 || ||| |||| || | ||| || ||| |||| | ||||| |||| |||| || Sbjct 32041 TAGTTCTAATAACAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTT 32100 Query 18031 CATACCTAGTA-GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAG 18089 ||| || | || ||| || |||| || || | | ||| ||||| || || | ||| | Sbjct 32101 CATGCCAATTAAGTC-GACTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGG 32159 Query 18090 ACTCTTTTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAAT 18149 ||| ||||||| | | | || ||| | ||| | || | || ||| | Sbjct 32160 CATCTGTTATTATTTCCAAAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACA 32219 Query 18150 ATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAA 18209 ||||| |||||| ||| ||| || |||||||| | ||||| | ||| ||| | Sbjct 32220 TTAATAC---CGCAAATTCACAGTGCAAGCCTTCATCGCGTGATATCATTTCATTAGAGA 32276 Query 18210 ACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAG 18269 ||||||| || |||||||| || | ||| ||||||||||||||||| ||||| || | | Sbjct 32277 ACGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCAC 32336 Query 18270 AAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTAT 18329 |||||||||||| || ||| ||||| ||||| | | |||| | ||| | || Sbjct 32337 TAAAGAATATACCTTCGACGGCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCGAAT 32396 Query 18330 T-GCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCT 18388 | | | |||||| | |||||||||| | | | | || || |||| Sbjct 32397 GCGATGA-TATCCAAGCTAGTGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCA 32455 Query 18389 ATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAA 18448 || |||||||| | || || |||||||| |||| | ||||| || ||||| | ||| Sbjct 32456 ATGGCATTAAATAGATATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAA 32515 Query 18449 GAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCC 18508 ||||||||| || |||| ||||||| || || ||||| | |||||| | | || Sbjct 32516 CTATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCT 32575 Query 18509 TCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCA 18568 |||| ||||| ||| |||||| ||| || |||||||||||||| ||||| || Sbjct 32576 TCGGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 32635 Query 18569 GCAGATGCGAAAAATGCCAAAACATATTTAATGAAAT---GTTTTTCATTATCCTTGA-- 18623 | | || ||||| |||||||| | | ||| |||| ||| ||||| ||| | Sbjct 32636 GATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTA--CTTAACC 32693 Query 18624 GATTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATG 18683 || ||||| || || |||||||| || || ||||||||||| | ||||||||||||| Sbjct 32694 GA---TTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGATG 32750 Query 18684 ATTCGGCCT 18692 ||| |||| Sbjct 32751 CTTCCGCCT 32759 >seq383 Length=330124 Score = 161 bits (178), Expect = 1e-34 Identities = 166/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| ||||| || ||||| || || |||||||| ||| || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| ||| ||||| ||||| ||||||||||| |||||||| ||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | || |||| ||||||||||||||| |||||| | | || || ||||| |||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA-- 43901 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTA 156035 ||||||||| || | ||||| ||||| |||||| Sbjct 43902 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 43936 Score = 122 bits (134), Expect = 1e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | || ||||||||||| |||||||| || ||||| || || Sbjct 43493 AAAATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCG 43552 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || ||| |||||| |||||||| ||||| || || ||||| Sbjct 43553 TCTGACACTATTGAGAATGTTAAAGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGAT 43612 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || | || |||| ||| || ||||| | || ||| | | ||| | || |||||| Sbjct 43613 CAGCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTAT 43672 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || ||| |||||| | || | |||||||| Sbjct 43673 AACATACAGAAAGAGTCAACTTTGCATTTAGT 43704 >seq161 Length=579164 Score = 145 bits (160), Expect = 1e-29 Identities = 152/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| ||||||| | ||||| ||||||||||| || ||||| || | Sbjct 362453 AAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 362394 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || |||||||||||||| |||||||| Sbjct 362393 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 362334 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| || ||||| || | |||||| | |||||||| |||||| Sbjct 362333 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTAT 362274 Query 156000 AATATATCCAAAGAGGCGAC 156019 || ||| || ||| |||| Sbjct 362273 AACATACAAAAGGAGTCGAC 362254 >seq565 Length=193464 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||||||||| || || || ||||| ||| || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| |||||| ||| ||||| ||||| || ||||| || |||||||| || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| | || |||| || || || ||| | |||||| | | || || || ||||| || Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || || | || | |||||||| || Sbjct 150455 CATACAAAAGGAATCCACATTGCATTTAGTATT 150423 Score = 131 bits (144), Expect = 2e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| ||||||| |||||||||||||| || || || ||||| ||| || Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| ||||| || ||||| || |||||||| ||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || || ||| | ||||| | | || || || ||||| || Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| ||||| | || | ||||| || || Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATT 150651 Score = 127 bits (140), Expect = 3e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | |||||||| ||||| |||||||| || || ||||| ||| Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 159531 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| || || ||||| || ||||| || |||||||| Sbjct 159530 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 159471 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||||| |||||| ||||| || ||||| | || || || |||||| Sbjct 159470 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTAT 159411 Query 156000 AATAT 156004 ||||| Sbjct 159410 AATAT 159406 Score = 116 bits (128), Expect = 5e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || || | || |||||||||||||||||||| || || || || || Sbjct 151094 TAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 151035 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || |||| |||| || || |||| |||||| ||||||||||| || | || ||||| Sbjct 151034 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 150975 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||| | ||||| | ||| || || ||| | ||| || | | || | || || || Sbjct 150974 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 150915 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||||| |||| || ||||| || ||| Sbjct 150914 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTA 150878 Score = 113 bits (124), Expect = 7e-20 Identities = 134/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || || ||||||||||| ||| Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| |||||||| ||||| || || ||||| ||| Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || || | ||||| | || || || ||||| ||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 156003 AT 156004 || Sbjct 158951 AT 158950 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| || || || || ||||||||||| ||| Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || |||||| |||||||| ||||| || || ||||| ||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||| | ||| || || || | ||||| | || || || ||||| ||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 156003 AT 156004 || Sbjct 159179 AT 159178 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| ||||| || || |||||||||||| ||| Sbjct 158903 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAACCTTCC 158844 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || |||||| |||||||| ||||| || || ||||| ||| Sbjct 158843 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 158784 Query 155943 CAAAGATTG 155951 ||| | ||| Sbjct 158783 CAACGTTTG 158775 >seq17 Length=1967559 Score = 114 bits (126), Expect = 2e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || ||| | ||||| || || || || || |||| ||||| |||||| Sbjct 594867 AAAATGCAGATTTTTGTGAAAACGTTAACGGGCAATACCCTTACTTTAGATGTCGAACCG 594926 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 | |||| |||| ||| | |||| || || || ||||| || || || || ||| | Sbjct 594927 ACCGATACTATTGAAAAGATTAAAAGCAAGATTCAGGATAAGGACGGTATTCCACCAAAT 594986 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||| |||||||||||||||| |||||| | ||||||| | || || | | ||| Sbjct 594987 CAACGCCGATTGATTTATGCCGGCAAGCAGTTAGAAGATAGTTGCACGCTAACGAACTAT 595046 Query 156000 AATATATCCAAAGAG-GCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||| | |||| | ||||| || ||||| || ||| | ||| |||||| Sbjct 595047 AACATA-CAAAAGGGCGCGACTCTCCATTTGGTTTTACGTTTACTTGGCGGT 595097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731850089582000