Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq565 158 2e-33 seq383 158 2e-33 seq161 141 2e-28 seq451 131 3e-25 seq357 116 7e-21 >seq565 Length=193464 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || |||| || ||||| || || | ||| || |||||| ||||| Sbjct 158902 ATGCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG 158961 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||||||||| |||||||| || || | ||||| || || Sbjct 158962 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGG 159021 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| || ||||| || ||||| || | || Sbjct 159022 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCG 159081 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| ||| |||||||||||||| |||||||| | ||| || ||||| Sbjct 159082 ACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || ||||| ||||| || || | ||||| || || ||||| Sbjct 150633 ATTCCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCA 150692 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | || |||| ||||| ||||| |||||||| || || | ||||||||| || Sbjct 150693 GACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGA 150752 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| ||||| ||| || || |||||||| ||||||||| Sbjct 150753 GGAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCT 150812 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| |||||||| ||||| || ||||||| ||||| ||||| Sbjct 150813 ACTTCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || |||| || ||||| || || | ||| || |||||||||||| Sbjct 159358 ATGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCG 159417 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| |||| ||| || || |||||||| || | || ||||| || Sbjct 159418 GACAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGA 159477 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || ||| ||||| ||||||||||||| ||| Sbjct 159478 GGAATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCA 159537 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| | ||| || ||||| |||||||||||||| | ||| || |||||||| Sbjct 159538 ACTTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 141 bits (156), Expect = 2e-28 Identities = 159/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171858 AATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCA 171917 ||||||||||| || || | || || || || ||||| || || | || | || Sbjct 150423 AATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCT 150482 Query 171918 TCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCT 171977 ||||| ||||| ||||| |||||||| | ||||||||| || || || ||||| || ||| Sbjct 150483 TCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCT 150542 Query 171978 TGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTT 172037 || ||||| ||| || || |||||||| || | ||||||||| | ||| |||||| Sbjct 150543 TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTT 150602 Query 172038 TTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||| || ||||||| ||||| |||||| Sbjct 150603 TTTCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || |||| || ||||| || || | ||| || |||||| ||||| Sbjct 159130 ATGCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCG 159189 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || || | ||| |||| ||||||||||| |||||||| || || | ||||| || || Sbjct 159190 GACAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGG 159249 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| |||||||| |||||| || || || || || || || | || Sbjct 159250 GGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCG 159309 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||||| || ||||| || ||||| |||||||| | ||| || ||||| Sbjct 159310 ACTTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 116 bits (128), Expect = 7e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 171855 CGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCG 171914 ||||| || ||||| | || | ||||| ||| || || || || | | || | Sbjct 150876 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCCA 150935 Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 | ||||| ||||| |||||||| || || | ||||| || ||||| | || |||||| Sbjct 150936 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTTA 150995 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 ||||| |||||| |||| ||||| |||||||| || | || || || | || || Sbjct 150996 TCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATA 151055 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||||| ||||| ||||| || | ||| |||||||||||| Sbjct 151056 GTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 151094 Score = 116 bits (128), Expect = 7e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 171839 AATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATC 171898 ||||||||| | | |||| || ||||| || || | ||| || |||||| ||||| Sbjct 156475 AATACCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATC 156534 Query 171899 TGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 ||||||| ||| |||| ||||||||||| |||||||| || || | ||||| || || Sbjct 156535 AGATAAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGG 156594 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || |||||||| |||||||| |||||| || ||||| Sbjct 156595 GGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATT 156633 Score = 104 bits (114), Expect = 4e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 ||||| || || || |||||||| |||||||| |||||| || ||||| || ||| Sbjct 158782 TGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTA 158841 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || | ||| ||||||| ||| |||||||||||||| |||||||| | ||| || ||| Sbjct 158842 TCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGC 158901 Query 172068 AT 172069 || Sbjct 158902 AT 158903 Score = 84.2 bits (92), Expect = 4e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 171852 AGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGT 171911 || || | ||| || || | ||||| || || || || ||||| || || | || Sbjct 145775 AGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 145834 Query 171912 TCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCT 171971 | || ||||||||||| ||||| |||||||| | ||||||||| || || || ||||| Sbjct 145835 CCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCC 145894 Query 171972 TTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || ||||| ||||| ||| || || |||||||| || Sbjct 145895 TTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 145935 >seq383 Length=330124 Score = 158 bits (174), Expect = 2e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 |||||||| ||||| | |||||| || |||||||| || | || || | || ||| Sbjct 43704 ACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCC 43645 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 ||||| || |||||||||||||| | ||| || || || || |||||||| |||||||| Sbjct 43644 AATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTGA 43585 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 |||||| ||| ||||| ||||| || |||| || || |||| ||| || ||||| Sbjct 43584 ATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTG 43525 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||||| ||||| || | ||| ||||||||||| Sbjct 43524 CCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| ||||| || ||||| | |||| || || |||||||| ||||| Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||| || ||||| ||||||||||| | |||||| || || || Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || |||||||| ||||| ||||| ||| || || |||||||| || | ||||||| Sbjct 43830 ATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACT 43771 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 |||| ||| ||||||||||| || || ||||| | || |||||||| Sbjct 43770 TCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq161 Length=579164 Score = 141 bits (156), Expect = 2e-28 Identities = 181/249 (73%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 || |||||||| | || || | ||| || || || || | ||| || || |||||| Sbjct 362218 ATTATACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAA 362277 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || ||||||||||||||||| ||||| || | ||||| || Sbjct 362278 TCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCT 362337 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || || ||||||||||| || ||||| || ||||| ||||| || || | Sbjct 362338 GGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 362397 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTT---TA 172073 || ||||| | |||||| ||||| ||||| | ||||||| || || ||||||| || Sbjct 362398 TCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATA 362457 Query 172074 TTATAAAAA 172082 || |||||| Sbjct 362458 TTCTAAAAA 362466 >seq451 Length=246926 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||||| | || || || | |||||| || | ||||| |||||||||||| || Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 || | || | || |||||||| || ||||| ||||| |||| || ||||| ||||| Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||| ||||| || || || || ||||||||| ||||| || || | ||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || |||| ||||| | || |||||||| || Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq357 Length=326794 Score = 116 bits (128), Expect = 7e-21 Identities = 169/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 39419 ATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTC 39478 ||||||||| || |||||| |||||| || |||||||| |||||| | |||||| Sbjct 32518 ATACATTTCCGAGTGTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTC 32577 Query 39479 TGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 39536 | ||||| || || ||| ||||||| |||||||||||| ||||||||||| Sbjct 32578 GGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAACAATACCATCG 32635 Query 39537 GATGCTGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 39596 ||||| || || || || ||||| | | ||||||||| ||| || |||| Sbjct 32636 GATGCCGCAAAAAAAGCCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGA 32695 Query 39597 TCCCAAGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCT 39653 | |||| || | ||| || || | || ||||||||| ||||||||||||||| Sbjct 32696 TTCCAATCGTCGATATCTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAAAGATGCT 32752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905108902491000