Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq477 104 7e-17 seq357 95.1 4e-14 seq876 93.3 1e-13 seq229 84.2 6e-11 >seq477 Length=240241 Score = 104 bits (114), Expect = 7e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 381173 ATTCACGCCGACTAATTATGACTGCGTGGAATCCTTGCCAGATTAATGATATGGCTTTAC 381232 ||||||| || | ||| | | ||| |||||||| | ||| | | ||||| || | Sbjct 223711 ATTCACGTCGCCATATTGTTAGTGCTTGGAATCCAGCTGAAATTGAAAAAATGGCGTTGC 223770 Query 381233 CACCTTGCCATATTTTATGCCAGTTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTT 381292 | || || |||| |||| || || ||||||| | |||||| ||||||||| | Sbjct 223771 CGCCATGTCATACTTTAATGCAATTTTATGTTTCAAAAGATAATAAATTAAGTTGTCAAT 223830 Query 381293 TATATCAGCGTAGCGGTGATGTTGGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTA 381352 | ||||| ||||| | ||||||| | | |||||||| || |||||||| ||||| Sbjct 223831 TGTATCAACGTAGTGCTGATGTTTTTTTAGGTGTTCCTTTTAATATTGCAAGTTATTCGT 223890 Query 381353 TGCTTACTCGTTTAATTGCTCATCACACTGGACTAATTGCGGGTGATTTTGTTTA 381407 || | |||| ||||||||| || | ||| || | |||||||||||||| Sbjct 223891 TGTTAACTCATTTAATTGCGCAAGTTTCAGGATTAGAAGTTGGTGATTTTGTTTA 223945 >seq357 Length=326794 Score = 95.1 bits (104), Expect = 4e-14 Identities = 297/455 (65%), Gaps = 4/455 (1%) Strand=Plus/Minus Query 133211 CATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAAT 133270 ||||||||||| |||| || |||||||| || |||||||||||| ||| ||| Sbjct 32673 CATTTTATTTCACACGTTTTGGCTTTTTTTGCGGCATCCGATGGTATTGTTAATGAGAAT 32614 Query 133271 TTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTA 133330 |||| ||| ||| ||| |||||| | ||||||| ||| |||||||||| | Sbjct 32613 TTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAGCACGTTGCTTTTATGGGTTT 32554 Query 133331 CAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATC 133390 || ||||| ||||||||| | || || | ||| | || || || || || ||| Sbjct 32553 CAAATTGCCATGGAAAATGTACACTCGGAAATGTATAGTTTACTTATCGAAACATATATC 32494 Query 133391 AAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT-AGCGAATTTCCTTGTATTAA 133449 | |||| | ||| | | ||||| || |||||| || ||| | ||| |||| Sbjct 32493 AGAGATGAGAAAGAAAAGGAATATCTATTTAATGCCATTGAGACAATGCCATTG-GTTAA 32435 Query 133450 AAAGAAATCTGACTGGGCTATTAAATGGAT-CCAGGACAAGCGTGCGAGTTTTGCTACTC 133508 ||||| | || ||||| | ||||| || || || || | ||| | | | Sbjct 32434 GAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATTCG-GCTAATTTCGGTGAAC 32376 Query 133509 GTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTT 133568 || | | ||||| |||| || || || || || || ||||| ||| || || | Sbjct 32375 GTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGGAGCTTCGCTTCGATAT 32316 Query 133569 TTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAA 133628 ||||||| || || ||||| || | || || | || ||||| ||| | || ||| Sbjct 32315 TTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCTCTAATGAAATGATATCAC 32256 Query 133629 GGGACGAGGCACTTCACACCGAATTTGCCGTTTTA 133663 | || || | | ||| |||||||| || ||| Sbjct 32255 GCGATGAAGGCTTGCACTGTGAATTTGCGGTATTA 32221 >seq876 Length=69381 Score = 93.3 bits (102), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAA---TTTTGT 289077 |||||| ||||||||||||||||| ||||| || || | ||| || | |||| | Sbjct 58788 CTTTTTCGCCCAACAGCATCAATTTCATCAATAAAGATAATACATGGGGCTGCTTTTTTT 58729 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 |||||| ||| | ||| | | | || || |||| |||||| |||||||| || Sbjct 58728 GCCGCAAT---AAACATTTCACGAATTCTTGAAGCACCAACCCCAACAAACATTTCTTCA 58672 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||||||| | || | | || ||| | || |||||| || || || || | || Sbjct 58671 AATTCAGAACCTGAGATTGAAAAGAAGGGCACTCCTGCTTCACCAGCAACAGCTTTTGCT 58612 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGT 289248 | | || ||||| ||||| ||||| || || | || ||||| |||||| Sbjct 58611 AACAAGGTTTTACCCGTTCCCGGTGGGCCTTCCATTAATACTCCTTTTGGT 58561 >seq229 Length=467600 Score = 84.2 bits (92), Expect = 6e-11 Identities = 167/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 289111 GCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACA 289170 ||||| ||||||| | ||| | ||||| | | ||| | || | |||| |||| Sbjct 5511 GCTCCTTGACCAACCAGTACTTCATCGAATTCTGGACCGGCAGCATGGAAAAATGGTACA 5452 Query 289171 TTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCT 289230 ||||||||||| || || || | |||||||| || || ||||| || || |||||| | Sbjct 5451 TTTGCTTCGCCAGCAACAGCACGGGCCAGAAGAGTTTTTCCTGTACCTGGAGGTCCCACC 5392 Query 289231 AATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTT--ATATTTCTCAGGGCTCTTTA 289288 | | ||| ||||| || | |||||| | || | || |||| || || | |||| Sbjct 5391 AGCAAAACACCCTTAGGCA-GTTTGCCGC-CCAAATTTGAGAATTTTTCGGGATTTTTTA 5334 Query 289289 AAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAA 289348 ||||| || | ||| | ||||| | |||||| || || || || |||||| ||| Sbjct 5333 GGAATTCCACCACTTCTTTTAGTTCCTGTTTTGCTTCGTCGCAACCCTTAACATCATCAA 5274 Query 289349 AAGT 289352 | || Sbjct 5273 ACGT 5270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471772435897115