Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq104 136 3e-27 seq383 104 2e-17 seq161 104 2e-17 seq565 98.7 8e-16 seq451 86.0 5e-12 >seq104 Length=804542 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| || ||||||| ||||| || || | |||||| || | ||| |||||| | Sbjct 4329 CGGTGGATTTTTCAAAATGAAAGTATTCACCTTATGATTGACCTTAAGCAAACCGTGAAA 4270 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 ||||||||||| || ||| | ||| | | || ||||| || || | || ||||| Sbjct 4269 TCCGCATGCTTTACAAGACTGCGATATAGTTTGATTCTTAGCTGAAACTGTAAGATCAGT 4210 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| || || ||||| || || || ||||||||||| || ||||| ||||| || || Sbjct 4209 TTCCGGATTATCGCATTCAGGGCATAAGACAAACTTGCGTATAAAACCGTCAAGGAGATC 4150 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| ||| | | |||||||||||| || || ||||| || ||||| Sbjct 4149 TTGTAATTTAGCTGCGTCGTGGGAGCCATTAACAATGAAACGCTCGTT 4102 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||| | || ||||| || |||| ||||| || ||||| || || || ||| || Sbjct 4008 TTATAATCAAATTGAGTTTGAGCACCCAATTCGCAACCAAAGTATTTGGTTGGATAAGTG 3949 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| | || || | ||||| ||| || || || || || || ||||| Sbjct 3948 GCTGGTCGTCCTATGGCTCGTGCCACTTCGGCCATATTAACTATAACCGTTTTAATGCCA 3889 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 ||||| || |||||||| ||||| | |||||||||||||| || ||||| ||| Sbjct 3888 TTGCCTTTACCTTCGACTTTGGCTTGTAAACGCGGCATTTTGTACCGATAGAAAATGTCT 3829 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | ||||| ||||| || || || | ||||| Sbjct 3828 GTAACATTACGGTTCACATTAACCGAACCCAT 3797 >seq383 Length=330124 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||||| || || |||||||| || | ||| || || Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | || ||| || ||| |||||||||||| | || |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||| ||||| |||||||| |||| | | || || | || || || Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 43903 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||||||| | || |||||||| | || || || || Sbjct 43904 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 43950 >seq161 Length=579164 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| ||||| |||||| | || |||||||| ||||| | ||| |||||| Sbjct 362453 AAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 362394 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || || || ||| || ||||||||| | || ||| Sbjct 362393 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 362334 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| || |||||||| |||| |||| | || | ||||||| Sbjct 362333 CAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTAT 362274 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || || || |||||| |||| Sbjct 362273 AACATACAAAAGGAGTCGACCTTGCACTTGGT 362242 >seq565 Length=193464 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| |||||||| || || |||||||| || | ||| || || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || ||| || || ||||| ||||| | || || || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| | | |||| || || |||||| |||| |||| | | ||| || | |||||||| Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 110452 CATTCAAAAAGAATCTACGTTGCA 110475 ||| ||||| ||||| || ||||| Sbjct 150455 CATACAAAAGGAATCCACATTGCA 150432 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||||||||| |||||||| || || |||||||| || | ||| || | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || ||| || || ||||| ||||| | || || ||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | || | ||| || |||||| |||| || | | | || || | ||||||||| Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || || |||||||| || ||||| |||| || | || || || |||| Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATTGCGTCTCCGCGGTGGAA 150634 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||||||||||| || || || || || || || || ||||| || ||| | || ||| Sbjct 151096 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAG 151037 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || ||||||| | | | || ||| || ||| || ||||| || || || Sbjct 151036 CCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCA 150977 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 ||||||||| | | || | ||| || |||||| |||| ||| | | ||| | | || Sbjct 150976 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGAC 150917 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| |||||||| || | || |||| ||| | |||| || || Sbjct 150916 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 150864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 162/239 (68%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 110264 AGATTT---AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAA 110320 |||||| ||||||||||| || || ||||| ||||| |||||||| || || | ||| Sbjct 159599 AGATTTTAAAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAA 159540 Query 110321 ACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTG 110380 || || |||||| ||| | || ||| |||||| ||||| ||||| | Sbjct 159539 GTTGAACCGTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATT 159480 Query 110381 CCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATG 110440 || || || ||| | | |||| ||| || || || ||||| || | | || || Sbjct 159479 CCTCCAGACCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTG 159420 Query 110441 GCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | ||||| || ||||| || || || || ||||| |||| || | ||||| || || Sbjct 159419 TCCGATTATAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159361 >seq451 Length=246926 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || ||||| ||||| |||| ||||| ||||| || | || || || Sbjct 37998 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 37939 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || ||| ||| | |||||| |||||| |||||||| || | || || Sbjct 37938 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 37879 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || ||| || | |||| || || || || |||| |||| | ||| || | ||||| Sbjct 37878 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 37819 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAAAAAATAAA 110509 || |||||||||||||| || || || | ||||| | ||||||| ||| ||| ||| Sbjct 37818 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGAGCAAAAAAA 37759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412829549540735