Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq383 129 9e-25 seq161 129 9e-25 seq565 114 2e-20 seq451 114 2e-20 >seq383 Length=330124 Score = 129 bits (142), Expect = 9e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| || ||||| ||||| || ||| | || ||||||| | Sbjct 43725 TGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCGG 43784 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || || ||| ||||| ||| |||||||||||||| || ||||||| Sbjct 43785 ATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAAC 43844 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | |||||||| ||||| || | || ||| | || || |||| ||||||| Sbjct 43845 AGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAATA 43904 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | ||||| ||||| || ||||||| || ||||| Sbjct 43905 TCCAAAAGGAATCTACGCTCCATTTGGTGTTACG 43938 >seq161 Length=579164 Score = 129 bits (142), Expect = 9e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | || || ||||| |||||| | || || || | | || Sbjct 362449 TGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCG 362390 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||||||||||||| || ||||||| Sbjct 362389 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAAC 362330 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || ||||||||||| || ||| | || ||| | |||||||| | Sbjct 362329 AACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAACA 362270 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || ||||| | || || ||| Sbjct 362269 TACAAAAGGAGTCGACCTTGCACTTGGTA 362241 >seq565 Length=193464 Score = 114 bits (126), Expect = 2e-20 Identities = 152/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||||||||| | ||||| || || |||||||| || ||| | || ||||||| | Sbjct 150633 TGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATCGG 150574 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| |||| || ||| ||||| ||| || ||||| ||||| || || |||| Sbjct 150573 ATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAAC 150514 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | ||||| || || ||||| || || ||| | || || | ||||| || | Sbjct 150513 AGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACA 150454 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATT 146242 ||||||| ||||| || | ||||||||||| Sbjct 150453 TACAAAAGGAATCCACATTGCATTTAGTATT 150423 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||| || |||||||| || || | || || || | || Sbjct 151089 TGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCCATCCG 151030 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| |||| |||||| ||| |||||| || | ||||| ||||||| Sbjct 151029 ATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGATCAAC 150970 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| || || || | || | | || || || | Sbjct 150969 AACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTACAACA 150910 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||||||||| ||||||| || ||||| || | || || | ||||||| Sbjct 150909 TTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCATGCAAATATT 150852 Score = 102 bits (112), Expect = 1e-16 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||||||||| || ||||| || ||| | || || |||| | Sbjct 159586 TGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTCAG 159527 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| || || ||| || ||||| ||||| || || || | Sbjct 159526 ATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGACCAGC 159467 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||| | || || | || || | |||||||||| Sbjct 159466 AACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAATA 159407 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || || || || || | ||||| || |||| Sbjct 159406 TTCAGAAGGAGTCAACCTTGCATTTGGTCCTACG 159373 >seq451 Length=246926 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || || || ||| |||| || |||| | Sbjct 37994 TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGG 37935 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||||||| || || || ||||| || ||||||||||| || | Sbjct 37934 ACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGC 37875 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | ||||| || || || ||||| || ||| | | || || | |||||||||| Sbjct 37874 AACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAATA 37815 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | ||||||||||| || | ||| | || || || || |||| || Sbjct 37814 TTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 37769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786142864143400