Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq451 181 8e-41 seq565 158 9e-34 seq161 150 1e-31 seq383 149 5e-31 seq17 96.9 3e-15 >seq451 Length=246926 Score = 181 bits (200), Expect = 8e-41 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 ||| || | |||||||| ||| | ||| | ||||||||||||||||| |||||||| | Sbjct 37768 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 37827 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| |||||| ||| || | ||| || ||||| | ||||||| |||||| || || | Sbjct 37828 CAAT-GTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 37886 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| ||||||||||| || ||| || | ||| ||| |||| | |||||| || |||| Sbjct 37887 GAATTCCCTCTTTGTCCTG-AATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCG 37945 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| || || ||||| |||| |||||| ||||| |||||||| || Sbjct 37946 ACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 37998 >seq565 Length=193464 Score = 158 bits (174), Expect = 9e-34 Identities = 175/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| | || || || || ||||| |||||||| | Sbjct 159361 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 159420 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||| ||| | ||||| | |||||| || || ||| Sbjct 159421 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 159480 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| ||| || | ||| ||| |||| | ||| || || |||| || Sbjct 159481 ATACCTTCCTTGTCTTG-AATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 159539 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||| | ||| ||||||||||||||||| ||||| || || || |||||||| Sbjct 159540 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 159590 Score = 143 bits (158), Expect = 2e-29 Identities = 160/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATCATC 29636 || ||||| | |||||||| ||||| ||||| ||||| | ||||| |||| ||| || Sbjct 150426 ACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATG-TGCGGCCATCTTC 150484 Query 29637 GAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTG 29696 | ||||||||||| | || || | || || || || |||||||| || |||||||| Sbjct 150485 CAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTG 150544 Query 29697 TAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTT 29756 | |||| ||| || |||| | ||| || || |||||||||| | ||| || ||||| Sbjct 150545 GATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTT 150604 Query 29757 GCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || |||||||||||||| |||||| Sbjct 150605 TCCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 141 bits (156), Expect = 7e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||||| | ||||||||||| || ||||| ||||| | | ||||| Sbjct 150647 ACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 150706 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||||| |||||| | ||||| | || || || || |||||||| || || Sbjct 150707 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 150766 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | |||| ||| || |||| | ||| || || ||||||||| | ||| || Sbjct 150767 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 150826 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| ||||| || |||||||||||||| ||||| Sbjct 150827 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 141 bits (156), Expect = 7e-29 Identities = 174/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| | |||||||| || || |||||||| |||||||| || || | Sbjct 150864 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 150923 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | |||||||||||| | ||||| | ||| ||||| || || Sbjct 150924 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 150983 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 | ||||||||| ||||| |||||| | ||| ||| | || | ||| || || | || || Sbjct 150984 ACACCCTCTTTATCTTG-AATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 151042 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 || | || |||||||| ||||| || || || || || ||||||||||||||| Sbjct 151043 CTCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 151097 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| | || || || || ||||| || ||||| | Sbjct 158905 CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 158964 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 158965 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159024 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | |||||| | || | || || ||| | || || Sbjct 159025 ATTCCTTCCTTATCTTG-AATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGAC 159083 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || ||||| ||||| || ||||| || || || ||||| Sbjct 159084 TTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| | || || || || ||||| || ||||| | Sbjct 159133 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 159192 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 159193 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159252 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | ||||| | || | ||||| ||| | || || Sbjct 159253 ATTCCTTCCTTATCTTG-AATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || |||||||| || ||||| || || || ||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 104 bits (114), Expect = 2e-17 Identities = 127/171 (74%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | | |||||| ||||| ||||| || ||||| ||||| ||||| ||||| | | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || | |||||||||||| | || || | || || || || || Sbjct 145826 AATG-TGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGG 145884 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 |||||| || |||||||| | |||| ||| || |||| | ||| || || Sbjct 145885 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 145935 Score = 82.4 bits (90), Expect = 6e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| || |||||||| | || || || || ||||| || ||||| | Sbjct 156479 CCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAT 156538 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | ||||||||||||| | ||||| | ||| ||||| || || Sbjct 156539 AAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 156598 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAA 29730 || || || || ||||| |||||| | |||||| | || | || || ||| Sbjct 156599 ATTCCTTCCTTATCTTG-AATTTTAGCCTTGACATTCTCAATGGTATCGGAA 156649 >seq161 Length=579164 Score = 150 bits (166), Expect = 1e-31 Identities = 167/220 (76%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | || || || ||||| ||||||||||||| | || || Sbjct 362235 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCC 362294 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | |||||| ||||| | ||||| | ||| ||||| || ||||| || ||||| Sbjct 362295 ATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 362354 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | |||||| |||| | |||||| ||| | || ||||| | ||| | Sbjct 362355 ATCCTG-AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAA 362413 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| | ||||||||||| || |||||||| Sbjct 362414 TAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTT 362453 >seq383 Length=330124 Score = 149 bits (164), Expect = 5e-31 Identities = 175/234 (75%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||||||||| || ||||| | || || ||||| || ||||||||||||| | Sbjct 43722 CCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 43663 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || | ||| || |||||| | || || | |||||||| ||||| Sbjct 43662 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 43603 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || ||||| |||||| | ||| ||| | || | ||||||||| | || || Sbjct 43602 ATTCCTTCCTTATCTTG-AATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAAC 43544 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAA 29792 || | ||| |||||||||||||| || || || || || ||||||||||| || Sbjct 43543 CTCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTAA 43490 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | | ||| | ||||||||| ||||| ||||| ||||| || ||||| || | Sbjct 43950 CCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGAC 43891 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || || || || ||| | || || | || ||||| || ||| Sbjct 43890 AAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGA 43831 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||||| ||| || | || | ||| || || ||||||| Sbjct 43830 ATGCCTTCTTTGTCTTG-AATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | ||| || ||||| || || || ||||| ||||| |||||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq17 Length=1967559 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | |||||||| || || | | ||||| |||||||| | || | |||| | Sbjct 595087 AAACGTAAAACCAAATGGAGAGTCGCGCCCTTTTGTATGTTATAGTTCGTTAGCGTGCAA 595028 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || | || ||||| ||||| ||||||| | |||| || |||||||| || Sbjct 595027 CTATCTTCTAACTGCTTGCCGGCATAAATCAATCGGCGTTGATTTGGTGGAATACCGTCC 594968 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || || || | || ||| | |||| | ||| || | |||| || || | ||| Sbjct 594967 TTATCCTGAATCTTGCTTTTAATCTTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTA 594908 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || ||||| ||||| ||||| ||||| ||||||||||| Sbjct 594907 AGGGTATTGCCCGTTAACGTTTTCACAAAAATCTGCATTTT 594867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385207955812695