Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq142 86.0 8e-12 seq477 82.4 1e-10 seq34 82.4 1e-10 >seq142 Length=613757 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23053 ATCATGGGGATGAATATAATTTTGATGGTCCAGGTCAAATTTTAGCTCATGCtttttttC 23112 |||| ||||||| ||||| ||||| ||||| || ||||||||||| ||||| || | || Sbjct 53226 ATCACGGGGATGGCTATAAATTTGACGGTCCTGGACAAATTTTAGCACATGCCTTCTATC 53285 Query 23113 CTGGTACTGGAAGAGGAGGAGATGCTCATTTTGAT 23147 | || |||| | ||||| ||||||||||| ||| Sbjct 53286 CGGGCGTTGGACGGGGAGGTGATGCTCATTTCGAT 53320 >seq477 Length=240241 Score = 82.4 bits (90), Expect = 1e-10 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 168826 AACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTAAGGAAAA 168885 || |||| ||||||| | || || ||||| |||||| ||||||||||||| |||| Sbjct 223750 AAATTGAAAAAATGGCGTTGCCGCCATGTCATACTTTAATGCAATTTTATGT-TTCAAAA 223808 Query 168886 AATCA-ATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCT 168944 || | | ||| |||||| ||||||||| | |||||| | ||||| || ||| Sbjct 223809 GATAATAAATTAAGTTGTCAATTGTATCAACGTAGTGCTGATGTTTTTTTAGGTGTTCCT 223868 Query 168945 TATAATATTGGATTTTATTCATTTTTAAC 168973 | |||||||| | |||||| || ||||| Sbjct 223869 TTTAATATTGCAAGTTATTCGTTGTTAAC 223897 >seq34 Length=1404381 Score = 82.4 bits (90), Expect = 1e-10 Identities = 63/72 (88%), Gaps = 2/72 (3%) Strand=Plus/Plus Query 51988 CATATAATGCTGATTTTGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAG 52047 ||||||| || ||||||||||| |||||||||||||||||||| || ||||| ||||||| Sbjct 26246 CATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCGCAATC-TATGGAG 26304 Query 52048 -CTACTGCTGAA 52058 ||| |||||| Sbjct 26305 ACTAGAGCTGAA 26316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635158584370600