Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq451 136 4e-27 seq565 134 1e-26 seq151 120 3e-22 seq383 118 1e-21 seq37 100 3e-16 seq161 98.7 1e-15 >seq451 Length=246926 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| |||||||| || | ||| | ||| ||||||||||| || || |||||| | Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | ||| || ||||| | |||| |||||||| ||||| || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| || ||||| | ||| | ||||| | |||||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 37996 >seq565 Length=193464 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||| | ||| |||||||| |||||||||||||| | Sbjct 150636 CCACCGCGGAGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGAC 150695 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | |||| |||||| | ||||| |||||| |||||| ||| || || || ||||| Sbjct 150696 AACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGA 150755 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | ||| | || || | | ||||||| Sbjct 150756 ATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACT 150815 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | || || || ||||| ||||| || ||||||||||| Sbjct 150816 TCCAAAGTGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 125 bits (138), Expect = 7e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 137198 GCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGT 137257 |||| |||||||| | ||| ||||| ||||||||||||||||| || ||||| | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 137258 CTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGT 137317 |||| | ||||| ||||| | || | ||| || || || ||||| || ||||| |||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 137318 CGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCG 137377 | |||||| ||| | | ||| | || || | ||||||||||| | ||| | | Sbjct 150541 CTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGG 150600 Query 137378 TCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | || || ||||| ||||| || ||||||||||| Sbjct 150601 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || ||||| | || || || || || || || |||||| Sbjct 159360 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGA 159419 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||| ||||| || || ||| | |||| ||||||||| || ||||| Sbjct 159420 CAAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGG 159479 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| ||| || ||| | | ||| | || |||| ||||| || Sbjct 159480 AATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAAC 159539 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || ||||| || |||||||||||||| |||||||| Sbjct 159540 TTCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || ||||| | || || || || || || ||||||||| Sbjct 159132 GCCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 159191 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||| | |||||| |||||| |||||| |||||| ||||| || || Sbjct 159192 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159251 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || |||||| || | | || | ||||| | || || || Sbjct 159252 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGAC 159311 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | || | |||||||| ||||||||||| ||||| |||||||| Sbjct 159312 TTCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | ||| ||||| | || || || || || || ||||||||| Sbjct 158904 GCCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGA 158963 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| |||||| | |||||| |||||| |||||| |||||| ||||| || || Sbjct 158964 CAAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGG 159023 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| || || |||||| || | | || | || || | || || || Sbjct 159024 GATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGAC 159083 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || || || ||||||||||| ||||| |||||||| Sbjct 159084 TTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| || || |||| |||||||| ||||||||||||||||| | Sbjct 145766 CCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 145825 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | |||||| ||||| | || | ||| || || || ||||| Sbjct 145826 AATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGA 145885 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 145886 ATACCTTCCTTGTC 145899 >seq151 Length=588408 Score = 120 bits (132), Expect = 3e-22 Identities = 291/438 (66%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 151005 AACTGGCCTCGAGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGG 151064 |||| ||||| | ||| ||| ||| | |||||| |||||||||||| || || | | Sbjct 334463 AACTAGCCTCTAAAGCACCATAATATATGGTTTCAAAAATTTGTTTATTTAAGCGAGCAG 334404 Query 151065 CAGCATCGCTCACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGC 151124 || | ||||| | || || |||| | || | ||| || || || ||||| | || Sbjct 334403 CATCCTCGCTTTCATAGGGGTAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACGC 334344 Query 151125 CTATGCCGATGGGACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAA 151182 |||| ||||| |||||||| || | |||| ||||||| || || | || | ||| | Sbjct 334343 CTATACCGATTGGACGATGACGTAAATTACATTTTTTGGC--TTCCGGCAGCGGATAGTA 334286 Query 151183 ATTGCGATCAATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAG 151242 |||| || || || ||||| | | | || | | || | || | || | Sbjct 334285 ATTGACGTCGATTATCTTATTGAGGTTTCTTGTTATAAGCTTTGCAACTTCTTTCAGTTT 334226 Query 151243 TTGAAAATCAAAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATT 151299 || |||||| | |||| | | | | |||| || ||||| || || ||||| Sbjct 334225 CTGGAAATCATATTGTTTATCTGTCGTCACGAACATATTCACCGCAATTGAGGCCAGATT 334166 Query 151300 ACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCA 151359 || || || |||| || | || ||||| || ||||| | |||||| || ||||| Sbjct 334165 GCAAACTGCTATTTCCTCAGCCGACGTATATTCGACAATTTCTGTACACAAGTTACTGCA 334106 Query 151360 TTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACAT 151419 |||||| || ||| |||||| |||||||| || ||||| || ||||| | ||| Sbjct 334105 TTTTATTGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCAT 334046 Query 151420 GTACGGTGTGCCGGTTTC 151437 ||| || || ||||| || Sbjct 334045 GTAAGGAGTTCCGGTCTC 334028 >seq383 Length=330124 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||| || | ||| || || ||||| | |||||||| ||||| || || || || Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || |||| ||||| || || ||||| ||| | || | || || ||||| ||||| Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||||||| ||| | | || | || || | ||||||||| Sbjct 43831 AATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTAC 43772 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || || || ||||| |||||||| || || ||||| Sbjct 43771 TTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq37 Length=1463180 Score = 100 bits (110), Expect = 3e-16 Identities = 428/672 (64%), Gaps = 11/672 (2%) Strand=Plus/Plus Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 || ||||| ||||||||||| || ||||| || || | ||||| ||||| || Sbjct 1099520 GGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 1099579 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 || ||||| ||||| || | ||| || ||| || | ||| | ||||| | | Sbjct 1099580 ACCAGCAAAGAATTGCGCACTCCATAACTTTTAATGTCGTCTTTAAGAGCCGACCAATTC 1099639 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 |||| ||| || ||| ||||| ||| ||||| | || |||| || | Sbjct 1099640 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACGGGA 1099699 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT--GCCAGTTCGTAACTGGCCTCGA 151016 ||||| || | || || || | || | | |||| ||| |||| || || | Sbjct 1099700 CTACCTTCATAGGTTTCGTACGGACCGT--ACTGTTTGGCCAATTCACAACTAGCTTCTA 1099757 Query 151017 GCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA 151076 ||| ||| ||| | |||||| |||||||||||| || | | ||| ||||| Sbjct 1099758 AGGCACCATAATATATTGTTTCAAAAATTTGTTTATTTAAGCGTGCAGCACTTTCGCTTT 1099817 Query 151077 CGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGG 151136 | || || |||| | || | ||| || || || ||||| | |||| || || | Sbjct 1099818 CATAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCTTGGACACCTAAACCAATTG 1099877 Query 151137 GACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGG--TAGAAATTGCGATCAAT 151194 ||||||| || | |||||| ||| | | || | | || | ||| ||||| ||| || Sbjct 1099878 GACGATGACGAAAATTAGACTTTCTGGT--TTCCGACAGCGGATAGTAATTGACATCGAT 1099935 Query 151195 AATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAA 151254 || || || | | | || | | ||| | || | | | ||||||||| | Sbjct 1099936 TATCTTGTTGAGGTTTCTTGTTATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAATCATA 1099995 Query 151255 AG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGT 151311 |||| | | | | |||| | ||||| || |||||||| || || || | Sbjct 1099996 TTGTTTATCTGTGGTCACGAACATATTCAACGCAATTGAGGCTAGATTGCAAACTGCTAT 1100055 Query 151312 TTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCC 151371 ||| || || | ||||| || ||||| | |||||| || ||||||||||| || Sbjct 1100056 TTCTTCAGGTGATGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCC 1100115 Query 151372 GCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCC 151431 ||| |||||| ||||| || || ||||| || ||||| | |||||| || || || Sbjct 1100116 AACATTCTGTTGATTACTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTCCC 1100175 Query 151432 GGTTTCGGCTTG 151443 ||| || |||| Sbjct 1100176 GGTCTCTACTTG 1100187 >seq161 Length=579164 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 137215 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 137274 || || || ||||||||||| ||||| | || | | ||||| | |||||||||| Sbjct 362254 GTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCCAATTGTTTACCA 362313 Query 137275 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 137334 || | |||| |||||| ||||| ||||| ||||||||||| || |||||| || Sbjct 362314 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 362373 Query 137335 AGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 137394 | | ||| | ||||| | || || ||||| | ||| | || ||||| || | ||| Sbjct 362374 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 362433 Query 137395 TTTACGAATATTTGCAT 137411 || || || |||||||| Sbjct 362434 TTAACAAAAATTTGCAT 362450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488529374214000