Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq383 194 3e-44 seq565 174 3e-38 seq161 168 1e-36 seq451 149 1e-30 seq528 84.2 4e-11 >seq383 Length=330124 Score = 194 bits (214), Expect = 3e-44 Identities = 182/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | ||||||||| ||||| |||| ||| || ||||||||||| |||||||| || Sbjct 43722 CCCCCACGCAAACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAA 43663 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || | ||| ||||||||||| |||| | || |||||||| || Sbjct 43662 AGAGTACGGCCATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGG 43603 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || ||||| ||||| ||||| || ||| || || || Sbjct 43602 ATTCCTTCCTTATCTTGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACC 43543 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || ||||| || || ||||| ||||| ||||| || || ||||||||| ||| Sbjct 43542 TCTAAAGTGATAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTTTA 43491 Score = 163 bits (180), Expect = 6e-35 Identities = 179/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 |||| | || ||||| | | ||| | || || || || |||||||| || || |||| Sbjct 43961 TTTAGAATCTGCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATAT 43902 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 |||| || || | | | || ||||| || || || || ||||| |||| | |||| Sbjct 43901 TATAGTCTGACAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTT 43842 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 |||||||||| || ||||| || |||||||| |||||||| || || ||||| ||||| Sbjct 43841 GATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCG 43782 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| ||||| || || || |||||||| || |||||||| |||||||| Sbjct 43781 AGGGTTCTACTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCAT 43724 >seq565 Length=193464 Score = 174 bits (192), Expect = 3e-38 Identities = 168/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || |||| || |||||||||||||| || |||||||| | | | || Sbjct 150647 ACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCC 150706 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| | ||||||||||||||||| | | ||||| |||||||| || |||||||| Sbjct 150707 GTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTT 150766 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||| || |||||||| || ||||| || ||||| | ||||||||||||||| || Sbjct 150767 GTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGAT 150826 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || |||||||| ||||| Sbjct 150827 GGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150862 Score = 167 bits (184), Expect = 5e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| ||||| || |||| || || || ||||| ||||| ||||| || Sbjct 158905 CCACCGCGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 158964 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| | |||||| ||||||||||| | | |||||||||||| || Sbjct 158965 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159024 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || ||||| ||||| ||||| ||| || ||| Sbjct 159025 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACT 159084 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || || ||||| || || || || || ||||| Sbjct 159085 TCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCAT 159131 Score = 165 bits (182), Expect = 2e-35 Identities = 175/231 (76%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || || |||| || || || ||||| ||||||||||| || Sbjct 159361 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 159420 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| ||||| || || ||||| || | | ||| || |||||||| Sbjct 159421 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 159480 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| ||||||||||| ||||| |||||||| || ||||| ||||| ||| Sbjct 159481 ATACCTTCCTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACT 159540 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||| || || ||||| || || || ||||| || || |||||| || Sbjct 159541 TCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTTT 159591 Score = 158 bits (174), Expect = 2e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 ||||| |||| || ||||| || ||||| || |||||||| | | | || ||||| Sbjct 150426 ACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCC 150485 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 | ||||| ||||| || |||| | ||||| |||||||| || |||||||| ||||| Sbjct 150486 AACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 150545 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 || |||||||| || ||||| || ||||| ||||||||||||||||| || || || Sbjct 150546 ATTTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTT 150605 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCATT 82811 || ||||| || || |||||||| |||||| Sbjct 150606 CCAGTCAAAGTTTTAACAAATATTTGCATT 150635 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || || |||| || || || ||||| ||||| ||||| || Sbjct 159133 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGAC 159192 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | |||||||| | |||||| ||||||||||| | | |||||||||||| || Sbjct 159193 AAGGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGG 159252 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||||||||||||||| || || || || || ||||| || || ||| || ||| Sbjct 159253 ATTCCTTCCTTATCTTGAATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACT 159312 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||| ||||| || || || || || ||||| Sbjct 159313 TCTAAGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 159359 Score = 152 bits (168), Expect = 1e-31 Identities = 135/169 (80%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||| || || || |||| || || || ||||| ||||| ||||||| Sbjct 156477 TACCACCGCGCAAACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAG 156536 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | |||||||| | |||||| ||||||||||| | | |||||||||||| | Sbjct 156537 ATAAAGTGCGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGG 156596 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 | |||||||||||||||||||| || || || ||||| ||||| ||||| Sbjct 156597 GGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATC 156645 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| | ||| || || || || ||||||||||| || || || ||||| Sbjct 150864 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAG 150923 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || | ||| | ||||| ||||||||||| | | |||||||||||| || Sbjct 150924 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 150983 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 | || || ||||||||||| || | ||| ||||| ||||| ||||| || || || Sbjct 150984 ACACCCTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 151043 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 151044 TCCAAGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATT 151091 Score = 132 bits (146), Expect = 9e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | |||||| || ||||| ||||||||||| || ||||| || |||||||| Sbjct 145765 ACCTCCGCGGAGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 145824 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| | |||||| ||||| || |||| | ||||| |||||||| Sbjct 145825 CAATGTGCGGCCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGG 145884 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATC 82750 || |||||||| ||||| || |||||||| || ||||| || ||||| Sbjct 145885 AATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATC 145932 Score = 114 bits (126), Expect = 3e-20 Identities = 99/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82688 TTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGT 82747 |||||||||||| || |||||||||||||||||||| || || || ||||| ||||| || Sbjct 158781 TTGTTGATCTGGGGGGATTCCTTCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGT 158840 Query 82748 ATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTG 82807 ||| |||||| ||||| ||||| || || || || ||||| || || || || || || Sbjct 158841 ATCGGAAGGTTCGACTTCTAAAGTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTG 158900 Query 82808 CAT 82810 ||| Sbjct 158901 CAT 158903 >seq161 Length=579164 Score = 168 bits (186), Expect = 1e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || ||||||| || || || || ||||| |||||||| | Sbjct 362222 TACCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCG 362281 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | || ||||| | |||||| ||||| || || | | |||||||||||||| Sbjct 362282 ATAAAGTCCGCCCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAG 362341 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| ||||| || || || ||||||||||| || || ||| || | Sbjct 362342 GAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAA 362401 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 |||||||||| || || ||||| || | || || ||||| || |||||| ||||||| Sbjct 362402 CTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTATATT 362459 >seq451 Length=246926 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| |||||||| || | || | || |||||||| || ||||||||||| || Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | ||| ||||| | ||| |||||||| || || | || ||| || || || || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| |||||||||||||| || || || ||||| || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || |||||||| |||||||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 37995 >seq528 Length=219945 Score = 84.2 bits (92), Expect = 4e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 198342 TGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATG 198401 ||||| || | ||| | || |||| |||| || |||||||| ||||||| | ||| Sbjct 31384 TGGAACTCAGCTCAACTGCAATTGATGCGAGAGGGTAAAATGCACGGTTTTTTGCGTATG 31325 Query 198402 TACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGACGCTTTG 198452 || |||||||||||||| | |||||| | | || ||||||||||||||| Sbjct 31324 TATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCGGAAGACGCTTTG 31274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981797071711905