Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq565 111 2e-19 seq383 98.7 1e-15 seq451 96.9 3e-15 >seq565 Length=193464 Score = 111 bits (122), Expect = 2e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| |||||||||||| || ||| ||| || | Sbjct 159154 AAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAAT 159213 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || | || | || || || || || ||||| |||||||| || ||| Sbjct 159214 TGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATC-TTGAAT 159272 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | ||||| ||||||| ||||| || || | ||||| ||| ||||| Sbjct 159273 TTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTGCC 159332 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||||| |||||||| |||||| Sbjct 159333 AGTCAATGTTTTGACGAAAATTTGCATG 159360 Score = 102 bits (112), Expect = 8e-17 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| |||||||||||| || ||| ||| || | Sbjct 158926 AAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCCAAT 158985 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || | || | || || || || || ||||| |||||||| || ||| Sbjct 158986 TGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATC-TTGAAT 159044 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | ||||| || |||| ||||| || || | |||| |||||| || Sbjct 159045 TTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAAGTGATGGTTTTACC 159104 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||||| |||||||| |||||| Sbjct 159105 AGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| ||||| ||||| ||||| |||||| || ||| ||| || || Sbjct 159382 AAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGACAAGGTGCGTCCGTCTTCCAGT 159441 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| | || |||||||| ||||| || ||||||||||| ||| Sbjct 159442 TGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGAATACCTTCCTTGTC-TTGAAT 159500 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 || |||| | | | || | || || | || || || || | |||| |||||||| Sbjct 159501 CTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACTTCCAAAGTGATAGTTTTGCC 159560 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || | ||||||||||| || ||||| Sbjct 159561 AGTTAATGTTTTTACGAAGATTTGCAT 159587 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| || || ||||| |||||||| || ||| | | | || || | Sbjct 150429 AAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA-TCTTCCAA 150487 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| ||||| ||| |||| | ||||| ||||| ||||| || ||||||||||| ||| Sbjct 150488 CTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT 150547 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||||||| | | | || | || || | || || || || | |||| |||||| | Sbjct 150548 -TTTTGCTTTAACGTTTTCGATAGTATCCGATGGTTCTACTTCCAAAGTGATGGTTTTTC 150606 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| |||||| || || || ||||| Sbjct 150607 CAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| ||||||||||| |||||||| || |||| ||| || | | Sbjct 150657 AAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCCAAC 150716 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || || || || | || | ||||| ||||| ||||| || ||||||||||| ||| Sbjct 150717 TGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGGAT- 150775 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||||| | | | || | || || | | || || || | |||| |||||| || Sbjct 150776 TTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTTCC 150835 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| |||||| || || || |||||| Sbjct 150836 AGTCAAAGTTTTAACAAATATTTGCATG 150863 >seq383 Length=330124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACG--AGTCCTCGA 133512 ||||| | || |||||||||||||| || |||| || | | | ||| ||||| | Sbjct 43701 AAATGCAAAGTTGACTCTTTCTGTATGTTATAAT--CCGAAAGAGTACGGCCATCCTCCA 43644 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||| || || |||| | |||||||| || || ||||| |||||||| || ||| Sbjct 43643 ATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATC-TTGA 43585 Query 133573 TCTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| |||| | | | ||||| ||||| | ||||| || || | |||| |||||| Sbjct 43584 ATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGATAGTTTTG 43525 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| || || ||||| |||||||| Sbjct 43524 CCAGTCAATGTCTTCACGAAGATCTGCAT 43496 >seq451 Length=246926 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| ||||| ||||| || ||||| |||||| || ||| ||| | || || | | Sbjct 37792 ATGTAATGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGACCA-TCTTCCAATT 37850 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| |||| | || ||||||||||| || || || || ||||| |||| Sbjct 37851 GCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT 37910 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | || | ||||| | ||| || || || | |||| ||| ||||| | Sbjct 37911 TGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCG 37970 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||||||||| Sbjct 37971 TTAGGGTTTTTACAAAAATCTGCAT 37995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406327589800