Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq151 161 2e-34 seq37 150 4e-31 seq34 114 3e-20 seq104 104 6e-17 seq357 102 2e-16 seq477 100 7e-16 seq42 89.7 1e-12 >seq151 Length=588408 Score = 161 bits (178), Expect = 2e-34 Identities = 329/480 (69%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 ||| |||||||| ||||| | ||||||||| | ||| ||||| |||||| ||| Sbjct 333643 TGGTCTTGTTCCTATGTTGCGCGTCTTCAACAATCTTGCCTGTTATGTACATCAAGATGG 333702 Query 110741 TA---AGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | | | | || || |||||||||| | ||||||||||| ||||||| || || Sbjct 333703 CAGACAACGTAGAGGTGCACTTGCTATCTACTTAGAACCTTGGCACGCAGATATTTTCGA 333762 Query 110798 ATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 ||| | || ||| ||| ||| || || ||| | | ||||| |||||||||| Sbjct 333763 ATTTCTTGA-CTTGAAAAAGAATACGGGCAAAGAGGAAGATCGTGCACGGGATTTATTTT 333821 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCT 110915 ||| ||||||| ||||||||||||||||| | || ||| ||| |||| |||||| Sbjct 333822 TTGCTCTGTGGATACCAGATTTATTCATGAAAAGAGTGGAAGCTGATGAGCAT-TGGTCT 333880 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 | ||||| || ||| | ||||| | |||||||||||| | | ||||| | Sbjct 333881 TTAATGTGCCCCCATAAATGCCCTGGCTTGGAAGATGTATATGGAGACAAATTTGATAAA 333940 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT 111035 | ||| |||||||||| | || || || ||| ||| ||||| || | Sbjct 333941 TTGTACATAAAATATGAAGACGAGGGTAAAGCGAATAAAATAATAAAAGCTCGTGAGTTG 334000 Query 111036 TGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA 111094 |||||| ||| | | | | ||| | || || ||||||||||| || | || ||||| Sbjct 334001 TGGTTCGCAAT-ATGCAGTGCCCAACTAGAGACCGGAACTCCTTACATGCTTTACAAAGA 334059 Query 111095 TCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 | | |||||||||| ||||||| |||| | || ||||| || | ||||| ||||| Sbjct 334060 TGCTTGTAATCGCAAAAGTAATCAACAGAATGTTGGCACAATAAAATGCAGTAACTTGTG 334119 >seq37 Length=1463180 Score = 150 bits (166), Expect = 4e-31 Identities = 559/862 (65%), Gaps = 23/862 (3%) Strand=Plus/Minus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||||||| | | || ||| | || | || Sbjct 1100941 TTTTGGCTTTAAAACTTTAGAACGGTCTTATTTATTAAAGATTAACGGCAAAATTGTGGA 1100882 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||||| | ||||| || ||||| ||||| || |||| ||| |||| Sbjct 1100881 GCGGCCACAACATATGTTAATGCGTGTCGCCATTGGCATTCACGGCGATGACATTGAAGC 1100822 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCT 110485 | ||||||| |||| || | | | | || ||||||| | || || | Sbjct 1100821 AGCTATTGAAACTTATAATCTCATGTCGGAGCGTTACTTTACTCATGCTTCCCCAACTTT 1100762 Query 110486 ATTTAACGCAGGAACTAATGGAGG---ACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 |||| || | ||| | | | ||||||| | || ||||| | ||| || Sbjct 1100761 ATTTGGTGCTG---CTACCGTACGCCCACAATTGTCGTCCTGCTTCTTGCTAACTATGCC 1100705 Query 110543 CGATGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAA 110601 || || || ||||| |||||| |||| | || | | || |||| |||||||| Sbjct 1100704 GGAAGACTCCATTGATGGTATT-ATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAAGT 1100646 Query 110602 ACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAA 110661 | || || || ||| | | ||||| | || ||||||| |||| || | Sbjct 1100645 CGGCCGGTGGGATAGGTCTAAATATTCATTGCGTACGAGCAAAAGGGACAAAGAT---AT 1100589 Query 110662 CAGCGAAGGGTGCT---TCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 | | || |||| || ||| |||||||| ||||| | | |||||| | || Sbjct 1100588 CTGGTAATGGTGACGTGTCTGATGGCCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTG 1100529 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| | ||||||||| | | | || | |||||||| || | || | Sbjct 1100528 CCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGC 1100469 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGAA 110834 |||||||| |||||||||| ||||| | || || ||| | | || | || ||| Sbjct 1100468 CTTGGCATGCAGATATATTCGAATTTCTC-AATTTGAAAAAGAATACGGGTAAAGAGGAA 1100410 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | | ||||| |||||||||||||| ||||||| | ||| | ||||||||| | || Sbjct 1100409 GATCGTGCACGGGATTTATTTTATGCTCTGTGGATACCGGATCTTTTCATGAAAAGAGTA 1100350 Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 | | ||| |||| |||||||| |||||||| ||| | ||||| | | ||| | Sbjct 1100349 GAGGCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAAT 1100291 Query 110954 ATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAA 111013 |||||| | | ||||| | | ||| |||||| ||| | || ||||| || Sbjct 1100290 TTATGGAGATAAATTTGATAAATTATACATAAAATACGAAGACGAGGGCAAAGCGAATAA 1100231 Query 111014 ACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGAA 111072 | ||| ||||| || | |||||| ||| | | | | ||||| || || || | Sbjct 1100230 AACAATAAAAGCTCGTGATTTATGGTTCGCAAT-ATGCAGTGCCCAAGTAGAGACCGGGA 1100172 Query 111073 CTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAA 111132 ||||||| || | || |||||| | |||||| ||| ||||||| |||| | || | Sbjct 1100171 CTCCTTACATGCTTTACAAAGATGCTTGTAATCGTAAAAGTAATCAACAGAATGTTGGCA 1100112 Query 111133 CAATTAAGTCTAGTAATTTGTG 111154 | || || | ||||| ||||| Sbjct 1100111 CTATAAAATGCAGTAACTTGTG 1100090 >seq34 Length=1404381 Score = 114 bits (126), Expect = 3e-20 Identities = 137/185 (74%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| || |||||| |||| | |||||| | ||||| ||||||| |||||| Sbjct 26116 AGACATTTGCGGGATGATGATTTGGTTATATTCAATCGTCAACCTACACTGCACAAAATG 26175 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| || Sbjct 26176 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTTAT-- 26233 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || ||||| || ||||||||||| |||||||||||| | |||||||| Sbjct 26234 -CTTGTACTTCCCCATATAACGCAGATTTTGATGGCGATGAAATGAATTTACATGTACCG 26292 Query 305483 CAATC 305487 ||||| Sbjct 26293 CAATC 26297 >seq104 Length=804542 Score = 104 bits (114), Expect = 6e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 305294 GATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCA 305353 ||||| ||| |||||||| || |||| ||| | |||||| | || || || Sbjct 280589 GATATAGTTGAGAGACATTTATGCGATGGTGATATAGTTTTATTCAATCGCCAGCCCTCG 280648 Query 305354 CTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGA 305413 || ||||||||||| || ||| |||| | | ||| ||| || || || || Sbjct 280649 CTTCATAAAATGTCGATTATGTGTCATCAGGCCAAGGTACAGCCTCAGCGTACTTTCCGT 280708 Query 305414 TTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATG 305473 || |||| | | |||||||||||||||||||| |||||||| || ||||| |||||| || Sbjct 280709 TTTAATGAATGCGCTTGTACGCCTTATAATGCTGATTTTGACGGGGATGAGATGAATTTG 280768 Query 305474 CATGTACCTCAA 305485 ||| |||| ||| Sbjct 280769 CATTTACCACAA 280780 >seq357 Length=326794 Score = 102 bits (112), Expect = 2e-16 Identities = 257/387 (66%), Gaps = 4/387 (1%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAATTTTTCTA 131855 |||| ||||| || |||||||| | ||||| | |||| |||||||| | Sbjct 32438 TTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATTCGGCTAATTTCGGTG 32379 Query 131856 CAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTA 131915 | | || ||||||| ||| || ||||||||||||||| || ||| | | | Sbjct 32378 AACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTGGGAGCTTCGCTTCGA 32319 Query 131916 TCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCATCT 131975 | |||||||| ||||| |||||| | ||||| || | | || || ||| || | || | Sbjct 32318 TATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCTCTAATGAAATGATAT 32259 Query 131976 CGAGAGATGAAGCATTGCATACTGAATTTGCTATATTAATCTATAGAAAATTTGCTGATA 132035 | | ||||||| ||||| ||||||||| ||||||| | || || ||||| | | Sbjct 32258 CACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGTTTA-AACATTTGATACAA 32200 Query 132036 AACTTGATGAAAATAA--TATTAAACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGA 132093 || || | ||| || ||| || | |||| || || ||| | || || || || Sbjct 32199 AAACCGA-GCAAAGAACGGATTTTGGAAATAATAACAGATGCCGTTAAAATTGAAAAAGA 32141 Query 132094 GTTTATTACAGAAGCTTTGCCTTGCAATTTGATTGGGATGAATGCTGACTCTATGAAGGA 132153 |||| | ||||| || || || | | || ||||| ||||| || |||| | Sbjct 32140 GTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATGAACAGCGAAAGTATGTGTAA 32081 Query 132154 GTACATTGAATTCGTTGCTGATCGTTT 132180 || || |||| ||||| |||||||| Sbjct 32080 ATATATAGAATATGTTGCCGATCGTTT 32054 >seq477 Length=240241 Score = 100 bits (110), Expect = 7e-16 Identities = 132/182 (73%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 58862 ATATTAAAAGGGATTCCAAGAAACATATCACCACTACGTTGATAAAATTGTAGATTAAGA 58921 ||||||||||| | || | ||| | |||| ||||||||||||| ||||| | | | Sbjct 223876 ATATTAAAAGGAACACCTAAAAAAACATCAGCACTACGTTGATACAATTGACAACTTAAT 223817 Query 58922 GTGTCATCTGCTTCTACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTA 58981 | | |||| | ||||||||||| |||| ||||||| || || | |||||||| Sbjct 223816 TTATTATCTTTTGAAACATAAAATTGCATTAAAGTATGACATGGCGGCAACGCCATTTTT 223757 Query 58982 TCAATATCACTTACATTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCA-TTTTT 59040 ||||| ||| | |||||| ||||| | |||| |||||| |||| || | | ||||| Sbjct 223756 TCAATTTCAGCTGGATTCCAAGCACTAACAATATGGCGACGTGAATATGGATTAGTTTTT 223697 Query 59041 AA 59042 || Sbjct 223696 AA 223695 >seq42 Length=1256002 Score = 89.7 bits (98), Expect = 1e-12 Identities = 153/216 (71%), Gaps = 12/216 (6%) Strand=Plus/Minus Query 279353 TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAA 279412 ||||| || |||||| | || || |||| || || ||| |||||| |||||||||| Sbjct 1191263 TTACGTTACGGTAAAGTGATGATCATGACCGATCAGGATCAAGATGGTTCTCACATTAAA 1191204 Query 279413 GGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT--GAATCAAAATTTTG 279470 || || || |||||| || | || ||||||||||||||| | | || || Sbjct 1191203 GGTTTGCTAATTAATTTCATTCACACAAACTGGCCAGAATTGTTACGCTTACCGTTTCTG 1191144 Query 279471 TAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAAGT---AT 279527 || | |||| ||| || ||| |||| || || || ||||| |||||| | | Sbjct 1191143 GAA--GAGTTTATAACTCCGATTGTTAAAGCTACGAA---GAAAAATGAAGAACTTTCGT 1191089 Query 279528 TTTATTCATTG-CAGAAGTTTGAACAATGGAAAGAT 279562 ||||||||||| ||||| |||||| |||||||| || Sbjct 1191088 TTTATTCATTGCCAGAA-TTTGAAGAATGGAAAAAT 1191054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186776381536595