Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq37 190 2e-43 seq151 185 8e-42 seq383 132 5e-26 seq565 122 8e-23 seq161 111 1e-19 >seq37 Length=1463180 Score = 190 bits (210), Expect = 2e-43 Identities = 626/956 (65%), Gaps = 33/956 (3%) Strand=Plus/Plus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 ||||||||||| ||||| || ||||||||| ||| || | ||||| | ||| | | Sbjct 1099250 TTAAACGATTGACTTTGGTCGATGAAAGCGCCGCGATCAACAGCCATGTTAATGGTTGAT 1099309 Query 146740 TTTGTCTTCATTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCA 146799 ||| | ||||||||| | ||||| || | | || | ||| || || || ||| Sbjct 1099310 TTTACCGAAATTTCCCAAACCGTTTTATATAATTCTTTTATGCTGTCAGGTATGGTTTCG 1099369 Query 146800 ATGTTTTGAATAGAGCCCTTGTGCGCAAAAAT--AGTGTTTCGTATT-TCGGGCGTGTAA 146856 |||||||| || ||||| || || || || ||| |||| | || || | || Sbjct 1099370 ATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCC---AA 1099426 Query 146857 AGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCC 146916 ||| | || | | | || | || |||| ||||||||||| |||||| || | | Sbjct 1099427 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACCACGATAAACTCACCAGAC 1099486 Query 146917 AGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAA 146975 || || |||| || | || || || |||| | |||||||||||||| || || || | Sbjct 1099487 AGTACGCGTCGTGTG-TAAACGTTTGAAGTGTATGGCTCAAAAGACTCGTTGTTACCAAG 1099545 Query 146976 TATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTA 147035 ||||| || || | || |||||||| || |||| ||| ||||| |||| || || Sbjct 1099546 AATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACTCCATA 1099605 Query 147036 CGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGTCACGTTC 147093 |||| ||| || | || ||| | | ||| || || ||||| | | Sbjct 1099606 ACTTTTAATGTCGTCTTTAAGAGCCGACCAATTC--CATAGATCAGTAGGCGTTTTATCC 1099663 Query 147094 CACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTT 147153 ||||| || || || || | ||| ||| ||||||| || | | || ||| Sbjct 1099664 CACATATCATATTGAAGGATACCTTTACTAACGGGACTACCTTCATAGGTTTCGTACGGA 1099723 Query 147154 CCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCG 147213 |||| | | ||||||||||| || || || | || ||||| ||||| ||||| Sbjct 1099724 CCGTACTGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCATAATATATTGTTTCAAAA 1099783 Query 147214 ATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAG 147273 |||||||| |||| | | || |||||| || || || ||||| | | | Sbjct 1099784 ATTTGTTTATTTAAGCGTGCAGCACTTTCGCTTTCATAGGGATAACGCATTAAAATTAGT 1099843 Query 147274 GCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG------CTTTTCGTTGCTG 147327 || || || || || |||| ||| | || || || ||||| || || ||| Sbjct 1099844 GCGTCAGCAAATCCTTGGACACCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTG 1099903 Query 147328 CGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACT 147387 | ||| || | ||||||| ||| ||| || |||||||||||||| | | Sbjct 1099904 -GTTTC-----CGACAGCGGATAGTAATTGACATCGATTATCTTGTTGAGGTTTCTTGTT 1099957 Query 147388 ACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTAC 147446 | || || | | | ||||||||| | |||||||| ||| | | |||| | Sbjct 1099958 ATAAGCTTGGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTGGTCACGAA- 1100016 Query 147447 GCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGT 147505 ||| |||| || || || || |||||||| || || | ||||| || | | | | Sbjct 1100017 -CAT--ATTCAACGCAATTGAGGCTAGATTGCAAACTGCTATTTCTTCAGGTGATG-TAT 1100072 Query 147506 ACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTG 147564 | | |||||||| | |||| ||| ||||||||||| | | |||| ||| || ||||| Sbjct 1100073 ATTCGACGATTTCTGTACACAAGTTACTGCATTTTAT-AGTGCCAACATTCTGTTGATTA 1100131 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||| ||||| || || |||||| | |||||||| || |||||||| ||||| Sbjct 1100132 CTTTTACGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTCCCGGTCTCTACTTG 1100187 >seq151 Length=588408 Score = 185 bits (204), Expect = 8e-42 Identities = 619/950 (65%), Gaps = 19/950 (2%) Strand=Plus/Minus Query 146679 ATTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCG 146738 ||| || ||||| ||||| || |||||||| ||| ||||| ||||| | ||| | | Sbjct 334960 ATTGAATGATTGACTTTGGTCGATGAAAGCACCGCGATCGGCAGCCATGTTAATGGTT-G 334902 Query 146739 TTTTGTCTTCA-TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTT 146797 ||| || | |||||||| | ||||| |||| | || | ||||| || || | | Sbjct 334901 ATTTCACTGAAATTTCCCAAACCGTTTTATACAATTCTTTTATACTATCAGGTATGGCCT 334842 Query 146798 CAATGTTTTGAATAGAGCCCTTGTGCGCAAAAAT--AGTGTTTCGTATTTCGGGCGTGTA 146855 |||||||||| || ||||| || || || || ||| |||| || || | | Sbjct 334841 CAATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTC--ATGTCATCATTCCA 334784 Query 146856 AAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGC 146915 |||| | | | | | || | | |||| |||||||| || ||| || || | Sbjct 334783 AAGGCGCAACTCAGTCAAATCTTTGAGCAAATGATGATTGACGACAATAAATTCACCGGA 334724 Query 146916 CAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTA 146974 || ||||||| || | || || || ||| | ||||| |||||||| ||||| || | Sbjct 334723 CAATACACGTCGTGTG-TAAACGTTTGACGTGTATGGCTCGAAAGACTCGTTATTACCAA 334665 Query 146975 ATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGT 147034 ||||| || || | ||||||||||| || |||| ||| ||||| |||| || | Sbjct 334664 GAATTTGAGCAGTAGACGCGGTAGGCATTGGTGCTACCAGCAAGGAATTGCGCACTCCAT 334605 Query 147035 ACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGTCACGTT 147092 | |||| ||| || | || ||| | ||| | || || |||||| | Sbjct 334604 AACTCTTAATGTCGTCTTTAAGAGCCGACCAATTCCATA--GATCAGTAGGCGTCTTATC 334547 Query 147093 CCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCT 147152 |||||| || || || || | ||| ||| | ||||| || | | || ||| Sbjct 334546 CCACATATCATATTGAAGAATGCCTTTACTAACTGGACTACCTTCATATGTTTCGTAAGG 334487 Query 147153 TCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGC 147212 |||| | | ||||| ||||| || ||||| | || ||||| ||||||||||| Sbjct 334486 ACCGTATTGTTTGGCCAACTCACAACTAGCCTCTAAAGCACCATAATATATGGTTTCAAA 334427 Query 147213 GATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAA 147272 |||||||| |||| | | || || ||||| || || || ||||| | | | Sbjct 334426 AATTTGTTTATTTAAGCGAGCAGCATCCTCGCTTTCATAGGGGTAACGCATTAAAATTAG 334367 Query 147273 GGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTT 147332 || || || || || |||| || | ||||| || ||||| | || | || Sbjct 334366 TGCGTCAGCAAATCCTTGGACGCCTATACCGATTGGACGATGACGTAAATTACATTTTTT 334307 Query 147333 CGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAAC 147392 || || | ||||||| ||| || || ||||| |||||||| | || || Sbjct 334306 GGCTTCCGGCAGCGGATAGTAATTGACGTCGATTATCTTATTGAGGTTTCTTGTTATAAG 334247 Query 147393 TTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATT 147451 || | | | ||| ||||||| ||||||||| ||| ||| |||| || ||| Sbjct 334246 CTTTGCAACTTCTTTCAGTTTCTGGAAATCATATTGTTTATCTGTCGTCACGAACATATT 334187 Query 147452 GGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGC 147510 ||| || || || ||||||||||| || || | || || || | || | || | Sbjct 334186 ----CACCGCAATTGAGGCCAGATTGCAAACTGCTATTTCCTCAGCCGACG-TATATTCG 334132 Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 || ||||| | |||| ||| ||||||||||| || | ||| || ||||| ||||| Sbjct 334131 ACAATTTCTGTACACAAGTTACTGCATTTTATTGTGCCAACATTCTGTTGATTACTTTTG 334072 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 ||||| || || |||||| | |||||||| || |||||||| | ||| Sbjct 334071 CGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTAGTTG 334022 >seq383 Length=330124 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 || || |||||||| | | || || ||||| || || ||||| || ||| || | Sbjct 43938 CGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGACAAGGTGCGGCCA 43879 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| ||||||| | | |||| ||||||||||||||||| ||||||||||| Sbjct 43878 TCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGGAATGCCTTCTTTG 43819 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||||| ||| | | || | |||||| | || || ||||| | || | Sbjct 43818 TCTTGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTACTTCTAAAGTGATG 43759 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 |||||||| |||| |||||||| || ||||||||| Sbjct 43758 GTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 >seq565 Length=193464 Score = 122 bits (134), Expect = 8e-23 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| || | ||||||||| | | ||||||| || ||||| ||||| ||| || ||| Sbjct 158911 CGCAGACGTAGAACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTG 158970 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || ||||| | ||||| || | | |||| | ||| ||||||||||| || || ||| Sbjct 158971 CGTCCGTCTTCCAATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCT 159030 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| |||||| || | | || | ||||||| ||||| ||||| | Sbjct 159031 TCCTTATCTTGAATTTTAGCCTTGACATTCTCAATGGTATCGGAAGGCTCGACTTCTAAA 159090 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||||||||||| ||||| | |||||| |||||| Sbjct 159091 GTGATGGTTTTACCAGTCAATGTTTTGACGAAAATTTGCATG 159132 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || ||||||||||| | | || ||||| |||||||||||||| | || Sbjct 150869 ACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGT 150928 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || ||| | |||||| || | | |||| | ||| ||||||||||| || | || Sbjct 150929 GCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACC 150988 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 |||||||| | | |||| |||| ||| | || | |||||||| ||||| || || | Sbjct 150989 CTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCA 151047 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 151048 AGGTGATAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCAT 151090 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||||| || ||||| ||||| ||| || ||| || ||||| Sbjct 159151 ACCAAATGCAAGGTTGACTCCTTCTGAATATTGTAATCGGACAAGGTGCGTCCGTCTTCC 159210 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||||| || | | |||| | ||| ||||||||||| || || ||||| ||||| | Sbjct 159211 AATTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGGGGGATTCCTTCCTTATCTTGA 159270 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | || | || |||| ||||| ||||| | || | || || Sbjct 159271 ATTTTAGCCTTGACGTTCTCAATTGTGTCGGAAGGCTCGACTTCTAAGGTGATGGTCTTG 159330 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||||| ||||| | |||||| |||||| Sbjct 159331 CCAGTCAATGTTTTGACGAAAATTTGCATG 159360 >seq161 Length=579164 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| ||||| || || | || ||| |||||| Sbjct 362242 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTCC 362301 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | |||||||| | | || | ||| |||||||||||||| |||||||||||||| | Sbjct 362302 AATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 362361 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| |||| ||||| ||||| | || | ||||| Sbjct 362362 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 362421 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | ||||| ||||| Sbjct 362422 CCAGTAAGAGTTTTAACAAAAATTTGCAT 362450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476596931452200