Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq451 129 5e-25 seq565 102 7e-17 seq383 100 3e-16 seq151 96.9 3e-15 >seq451 Length=246926 Score = 129 bits (142), Expect = 5e-25 Identities = 170/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| |||| || || | ||||| | || |||||| | Sbjct 37999 CAATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACC 37940 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || |||||||| | |||||| || ||| || |||||||| || || ||||| Sbjct 37939 CTCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGA 37880 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGAT 25348 |||||| || | |||| || || || ||| | ||||||| | | | |||| |||| Sbjct 37879 CCAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTC--CGAT 37822 Query 25349 TACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGA 25402 || |||||||||||||||||||| | ||| | ||||| | ||| |||| ||| Sbjct 37821 TATAATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 37768 >seq565 Length=193464 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || |||||| | || |||||||||||||| || ||| | ||||| | ||||| ||| | Sbjct 159590 AAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCG 159531 Query 25232 AACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGAT 25291 ||||||||||| | || ||| || ||| || || || ||||| || || || Sbjct 159530 TCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGAC 159471 Query 25292 CAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATT 25349 |||||| | | |||| | |||||| ||||| ||||| | | | |||| ||||| Sbjct 159470 CAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTC--CGATT 159413 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGT 25383 | |||||||| || || || ||| | ||||| || Sbjct 159412 ATAATATTCAGAAGGAGTCAACCTTGCATTTGGT 159379 Score = 100 bits (110), Expect = 3e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| || || |||||| | ||||| | ||||| ||| ||| | Sbjct 150634 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAA-CCATC 150576 Query 25235 G-ATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 | |||||||||| | || ||| |||||| || || || ||||| || || || || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAGCGATTAC 25351 || | | |||| || |||||||| | ||||||| | | |||| |||||| Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTC--TGATTAC 150458 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 || || ||||| |||||||| | |||||||| || Sbjct 150457 AACATACAAAAGGAATCCACATTGCATTTAGTATT 150423 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || || ||||| || |||||| | ||||| | || || || ||| Sbjct 151093 AAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA-GCC 151035 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | |||||||| ||| | || ||| |||||| |||||||||||| | || || || Sbjct 151034 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 150975 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| ||| | | || | | |||||||| | ||| ||| | | || || || Sbjct 150974 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 150915 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| ||||| |||||||| || | ||||| || ||| | ||| | || || Sbjct 150914 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 150864 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 ||||||| | || || |||||||| || || ||| | ||||| | |||||||| | Sbjct 159132 CATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTC 159073 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || ||| | || || |||||| ||||| || || || || || ||||| Sbjct 159072 CGATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCA 159013 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 ||| | | || | | ||||||||| | ||||| | | | |||| ||||||| Sbjct 159012 ACAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTC--CGATTAC 158955 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGT 25383 |||||||| || || || ||| | ||||| || Sbjct 158954 AATATTCAGAAGGAGTCAACCTTGCATTTGGT 158923 >seq383 Length=330124 Score = 100 bits (110), Expect = 3e-16 Identities = 153/216 (71%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | ||||||||||| || || || ||| | ||||| | ||||| ||| || Sbjct 43723 CATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTC 43782 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||||| ||| | || ||| ||||||| || ||||| || || || || ||||| Sbjct 43783 GGATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 43842 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTAC 25351 || | | |||| | ||| || || || ||||||| | | ||||| || || Sbjct 43843 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCA--GACTAT 43900 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTA 25387 ||||| ||||| ||||| || | ||||| |||||| Sbjct 43901 AATATCCAAAAGGAATCTACGCTCCATTTGGTGTTA 43936 >seq151 Length=588408 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 136656 ATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTTTAAACCCTTCTCCCAGGA 136715 |||||| || || || ||| | ||||| ||||| || ||||||||||| | ||| Sbjct 335071 ATTCGCTGCTGGCTTCGTTTTTAGATAATACATACCGGTCTTTAAACCGGCTTTCCATCC 335012 Query 136716 ATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGCCACGAAAAGATTTAGCGA 136775 |||| ||||||||| ||||| | ||| || || || || ||| | ||| | || Sbjct 335011 ATAAAAATGTATAGAAGACAATTTACCATAACTAGGTTCAGCTACGTGTATATTGAATGA 334952 Query 136776 TTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTTCAATAGTACTTTTTGCT- 136834 ||| || || |||||| ||| ||||| || || |||||||| ||| || ||| || Sbjct 334951 TTGACTTTGGTCGATGAAAGCACCGCGATCGGCAGCCATGTT-AATGGTTGATTTCACTG 334893 Query 136835 TAATTTCCCAAGCGGTTTTA 136854 |||||||||| | |||||| Sbjct 334892 AAATTTCCCAAACCGTTTTA 334873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445081074986400