Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq565 111 1e-19 seq161 100 2e-16 seq383 86.0 5e-12 >seq565 Length=193464 Score = 111 bits (122), Expect = 1e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| |||||||| || ||||| || ||||| |||||| Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||| | | |||| || |||||||| || |||||| || || |||||||| Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||||||| ||||| ||| | |||||||||||| Sbjct 150455 CATACAAAAGGAATCCACATTGCATTTAGTATTG 150422 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||||||||| |||||||| || ||||| || ||||| |||| | Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || | | | || ||| |||||| ||||| ||||| | || || ||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | || | ||| || ||||| || ||||| || || ||||||||| Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||| |||||||| ||| | ||||| |||||| Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATTG 150650 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/221 (69%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| || || || || ||||||||||| || || || ||| |||| || Sbjct 151097 TTTTAAAATGCAGATCTTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA 151038 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || |||| || ||| | || ||| |||||| || ||||| || || || Sbjct 151037 GCCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACC 150978 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGC 106430 ||||||||| | | || | ||| |||||||| || ||| || | | ||| | Sbjct 150977 AGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCT--CT 150920 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATT 106471 || |||||||| || |||||||| ||||| ||||| || || Sbjct 150919 GACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTT 150879 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||||||||||||||||||||| ||| | ||| || || | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || |||||| || || ||||| | ||| |||||| Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | | || | ||| ||||||||||| ||||| || || ||||||||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || || || || || | ||||| || Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGT 159151 >seq161 Length=579164 Score = 100 bits (110), Expect = 2e-16 Identities = 161/230 (70%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 106240 TCATTTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTA 106299 |||||| || || | ||||||||||||||||||||||||| | |||||||| || |||| Sbjct 362469 TCATTTTTA-GAATATAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTA 362411 Query 106300 CCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAG 106359 | ||||| || || ||| || ||| | || || |||||| || |||| Sbjct 362410 CTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAG 362351 Query 106360 AAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTA 106419 ||||| | || ||||||||| | | |||| || || |||||||| |||||| Sbjct 362350 AAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGC 362291 Query 106420 AAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 ||| | ||||| ||||||||||| || || || | || || ||| Sbjct 362290 GGACTTTATCGGATTATAACATACAAAAGGAGTCGACCTTGCACTTGGTA 362241 >seq383 Length=330124 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| ||||| || || ||||| || | ||| ||||||| Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| ||||||| |||||||||||| | || |||||| Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || | | |||| ||| || || || | |||||| || || || || || Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 43903 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATT 106471 || ||||| |||||||| || ||||| || || Sbjct 43904 ATCCAAAAGGAATCTACGCTCCATTTGGTGTT 43935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402317856376160