Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq477 105 1e-17 seq912 84.2 5e-11 >seq477 Length=240241 Score = 105 bits (116), Expect = 1e-17 Identities = 212/314 (68%), Gaps = 3/314 (1%) Strand=Plus/Plus Query 38252 TAAAAAATGATCCATATGGACGCCGACATATTCTAAGTGCATGGAATGTTGGTGAGCTTG 38311 |||||| | |||||||| ||| || |||||| | ||||| |||||| | ||| ||| Sbjct 223696 TAAAAACTAATCCATATTCACGTCGCCATATTGTTAGTGCTTGGAATCCAGCTGAAATTG 223755 Query 38312 ATGATATGGCTCTTCAACCATGTCATAGTTTTGTTCAATGGGTAGTT---AGTGATAATA 38368 | | ||||| | | |||||||||| ||| | |||| ||| | ||||||| Sbjct 223756 AAAAAATGGCGTTGCCGCCATGTCATACTTTAATGCAATTTTATGTTTCAAAAGATAATA 223815 Query 38369 AACTAAGTTGTATTCTGACCCAACGCTCAGCAGATACATTCTTGGGAGTTCCACTGAATA 38428 || |||||||| || ||||| || ||| || || || ||||| | |||| Sbjct 223816 AATTAAGTTGTCAATTGTATCAACGTAGTGCTGATGTTTTTTTAGGTGTTCCTTTTAATA 223875 Query 38429 TCACATCATATTCAGTACTCACCCATATGATAGCACAAATTACTGGATTAGAAGTTGGTG 38488 | || ||||| | | || ||| | || || ||| || | |||||||||||||||| Sbjct 223876 TTGCAAGTTATTCGTTGTTAACTCATTTAATTGCGCAAGTTTCAGGATTAGAAGTTGGTG 223935 Query 38489 AATTTATCTGGAACGGTGGAGATTGTCATATTTACTTGAATCATATCGAACAAGTAAAAG 38548 | ||| | | | |||||||| |||||||| || ||| | |||||| || | Sbjct 223936 ATTTTGTTTACACATTAGGAGATTGCCATATTTATAAAAACCATTTTACACAAGTTAATG 223995 Query 38549 AACAATTATCACGA 38562 |||| ||| || || Sbjct 223996 AACAGTTAACAAGA 224009 >seq912 Length=64277 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/144 (74%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 49390 TTCTACTGGATGAAATTGAAAAAGCACATCCAAAAGTACTGCTGACATTCCT--ACAAGT 49447 || || | |||||||||||||| || || || | | ||| | |||| | ||| | Sbjct 8086 TTTTATTTGATGAAATTGAAAAGGCCCACCCCGATATCCTGA--ATATTCTTTTACAGAT 8143 Query 49448 ATTGGATGAAGGGCGTTTGACTGGTTCACAAGGAAAAACAGTTTACTTTAATAATATTAC 49507 || || || || ||||| |||| ||| | ||||||||||||| | ||||| |||| | Sbjct 8144 TTTAGAAGATGGTCGTTTAACTGATTCGCTAGGAAAAACAGTTGATTTTAAAAATACAAT 8203 Query 49508 TGTTATTATGACTACAAACCTTGG 49531 | ||||||||||| ||||| |||| Sbjct 8204 TATTATTATGACTTCAAACATTGG 8227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108961169442605