Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq357 235 4e-57 seq35 127 2e-24 seq47 114 1e-20 >seq357 Length=326794 Score = 235 bits (260), Expect = 4e-57 Identities = 489/720 (68%), Gaps = 20/720 (3%) Strand=Plus/Minus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| |||||||||||||| | ||||||| | | |||||| | Sbjct 32751 GCATCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGACGATTGGAATCGG 32692 Query 43817 TTAA--AACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| || | ||| |||||||| || |||||||| |||||||| || || Sbjct 32691 TTAAGTAATGGC--GAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCGGCATCCG 32634 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||| ||||| || || ||| | ||||| |||||| || | |||| Sbjct 32633 ATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACCGAAG 32574 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 |||| || ||||||||||||||||||||||| |||||| | || ||||||||||| ||| Sbjct 32573 CACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATGTATAGTT 32514 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAG 44054 | || || || || || |||| ||||| | | || ||| | | |||||||| || | Sbjct 32513 TACTTATCGAAACATATATCAGAGATGAGAAAGAAAAGGAATATCTATTTAATGCCATTG 32454 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAAT- 44113 | ||| | || | |||| | || || || ||||| || |||||| || || Sbjct 32453 AGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCATCGCATT 32394 Query 44114 --GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | ||| || ||||| || | || || || | || ||||| || |||||| | Sbjct 32393 CGGCTAATTTCGGTGAACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATTCTTTAGTG 32334 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | || || | ||||||||| |||||||||| || | ||||| || || ||||| | Sbjct 32333 GGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACGTTCT 32274 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTG 44291 | ||||| | ||| || ||||||||||| || || || ||||| || | || Sbjct 32273 CTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATTAATGTTTA 32214 Query 44292 GATATCTAGGAGACGATAAGCCTTCATGTAAGA--CAATTACAGATATTGTTGTAGAGGC 44349 | || | || || | || | || |||| ||| || || | ||| || Sbjct 32213 AACATTT--GATACAAAAACCGAGCA---AAGAACGGATTTTGGAAATAATAACAGATGC 32159 Query 44350 AGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA 44409 || || || ||| |||| ||| ||||| || ||||| || | ||||| || ||||| Sbjct 32158 CGTTAAAATTGAAAAAGAGTTTTTGACAGAGGCCTTACCAGTCGACTTAATTGGCATGAA 32099 Query 44410 ---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 ||| | || || | ||||||| ||||| |||| |||||||| | || ||||| Sbjct 32098 CAGCGAAAGTATG-TGTA--AATATATAGAATATGTTGCCGATCGTTTGTTATTAGAACT 32042 >seq35 Length=1460975 Score = 127 bits (140), Expect = 2e-24 Identities = 227/330 (69%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| ||||||||||| || |||||| | || | ||| | ||||| || | ||| || Sbjct 1137597 GGAGTCCATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTG 1137538 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 |||||||||||||||||||| ||||| ||| | | || | || || || ||| || Sbjct 1137537 AATAATATTTTAGTTATTGGTATGACCAATCGCCGTGACATGATTGATGAGGCTTTACTA 1137478 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || || || || |||||| | | || ||||| | || || | ||| |||| | || Sbjct 1137477 CGCCCTGGCCGTTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTA 1137418 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGAT 19848 ||||| |||| || || || | ||||| | ||||| || || ||| Sbjct 1137417 CAAATTCTAAATATTCACACGAAACGTATGCGCGATTTTAATAAAATT---GCTGGAGAT 1137361 Query 19849 GTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGA 19908 || ||| ||||||| || || ||||||||| | |||||||| ||| | || || Sbjct 1137360 GTGGATACGAAAGAAATCGCTGCCCTTACCAAAAATTTCAGCGGCGCTGAATTGGAAGGC 1137301 Query 19909 TTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | || |||||||| | ||| ||| Sbjct 1137300 TTAGTACGTGCTGCCCAATCTACTGCTATG 1137271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || || ||| |||||| || || || || ||| | || |||| || | || Sbjct 1138028 ATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCCGTCGTGCTTTTGCCTCAAGAGTC 1137969 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || | || || || |||| |||| || |||||||| || ||||| | ||| Sbjct 1137968 TTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAACATGTCAAAGGTATTTTGTTGTAT 1137909 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || ||| || ||||| ||||| || | || | | || || | || Sbjct 1137908 GGACCTCCTGGTACCGGCAAAACCTTAATGGCTCGCCAAATAGGCAA--TATGTTGAATG 1137851 Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || ||||||||||||||||| || | ||| |||||||||| || | || Sbjct 1137850 CC-CGTGAGCCGAAAATTGTAAATGGTCCGCAAGTATTAGATAAATATGTCGGCGAGTCC 1137792 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 |||| ||| || |||| |||||||| || ||||| ||||| |||| Sbjct 1137791 GAAGCTAATATAAGACGGTTGTTTGCCGAAGCTGAGGAAGAGGAAAA 1137745 >seq47 Length=1194842 Score = 114 bits (126), Expect = 1e-20 Identities = 371/569 (65%), Gaps = 18/569 (3%) Strand=Plus/Plus Query 40860 GATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 || |||||||| | || || |||| || ||||| | ||| |||||||| ||| ||||| Sbjct 1117143 GAAGAAGGTGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCACAATAT 1117202 Query 40920 GACACTATGTACTCTGAT---TATACCAATAAAGGAATGGATCAATT---ACAGTGCGTT 40973 |||| ||| | | ||| ||| | | ||| | |||||||| |||| Sbjct 1117203 CGCACT-TGT-CGC-GATAGCTATGGTACGGAGGGAGTCGATCAATTGAAACAG------ 1117253 Query 40974 ATAGATACGAT--TAAATCCGATCCCGATAGC-CGACGTATAATATTGTGCGCGTGGAAC 41030 ||| || || ||| | | | || | || |||||||| || |||| | | ||||| Sbjct 1117254 ATAATTAGGACAATAACTACAAATCCCACAGATCGACGTATGATTTTGTCCTCTTGGAAT 1117313 Query 41031 CCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT 41090 ||| || ||| ||||| || || || || |||| || || || || || Sbjct 1117314 CCAGTAGATATACCAAAAATGGCCTTACCGCCCTGCCATTGCTTGGCCCAATTCTATGTA 1117373 Query 41091 TGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTC 41150 | |||| ||| ||||||||||| | ||||| | | || ||||| || || ||| Sbjct 1117374 TCCAATAATGAGTTGTCATGTCAACTTTATCAGCGCAGTGCCGATATGGGGCTGGGTGTC 1117433 Query 41151 CCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTA 41210 || ||||| ||||| ||||| | | |||| ||||||||| || | ||| | Sbjct 1117434 CCATTTAATATAGCATCGTATGCATTATTAACGTGTATGATTGCCCATTTAACCGGCCTT 1117493 Query 41211 AAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAG 41270 ||||| || || ||| | ||||| || ||| || ||||||| | || || | Sbjct 1117494 AAACCAGGCGAGTTTATACACACTACCGGTGATACGCACATTTACAAAACGCATATCCAA 1117553 Query 41271 CCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGC 41330 || |||| || ||| | ||||| ||||| ||||||| | | | || ||||| Sbjct 1117554 CCATTAAAGGAGCAATTAACACGCAAACCGCATGCATTTCCCAAATTGATAATAAAACGT 1117613 Query 41331 GCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCG 41390 || || ||||| ||||| ||||| | | |||||| | || || || ||||| Sbjct 1117614 GCCGTGGAAAATATTGAGGATTTCAGGTACTCTGATTTCGAAATTGTGGACTATAATCCC 1117673 Query 41391 TACCCTAAAATCCACATGGACATGTCTGT 41419 || || ||||| || ||||| || |||| Sbjct 1117674 TATCCAAAAATTCAAATGGAAATAGCTGT 1117702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444398631975