Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq383 163 3e-35 seq451 154 2e-32 seq565 147 2e-30 seq161 145 9e-30 seq226 84.2 2e-11 >seq383 Length=330124 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | || ||||| ||||| ||| | ||||||||| | Sbjct 43495 AATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTC 43554 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | || ||||||||||| || ||||| ||||| || ||||| || Sbjct 43555 TGACACTATTGAGAATGTTAAAGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCA 43614 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| ||||||||||||| |||||| | ||||||| ||||| || | || ||||| Sbjct 43615 GCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAA 43674 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || ||| | ||| ||||| ||||| | || || || Sbjct 43675 CATACAGAAAGAGTCAACTTTGCATTTAGTCCTGCGTTTGCGTGGGGG 43722 Score = 154 bits (170), Expect = 2e-32 Identities = 184/249 (74%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || | || || || || || ||| | || || || | Sbjct 43724 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 43783 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || || |||||||| ||||| || || ||||||||||| || Sbjct 43784 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 43843 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| |||||||||| |||||||| || || |||| || ||| | ||||||||||| Sbjct 43844 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 43903 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAAGTTTAAAGT 27645 ||||||||||||| || || ||| | || || ||||||||||| || | | |||| | Sbjct 43904 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCAGATTCTAAAAT 43963 Query 27646 T--TTTCCT 27652 | |||||| Sbjct 43964 TCATTTCCT 43972 >seq451 Length=246926 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || |||||||| || ||||||||||| || | Sbjct 37995 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 37936 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || ||||||||||| ||||||||||| || |||||| Sbjct 37935 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 37876 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | ||||| ||||| |||||| | || |||| ||| || | | || |||||| Sbjct 37875 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAAT 37816 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| |||||||| | ||||| || |||||| | || |||||| Sbjct 37815 ATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGGA 37768 >seq565 Length=193464 Score = 147 bits (162), Expect = 2e-30 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 |||||||||||| || || || | || ||||| ||||| ||| | || ||||| ||| Sbjct 159588 AATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTC 159529 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || ||| || | |||| | || || || ||||| |||||||| || ||||||||||| Sbjct 159528 AG---ATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAGGAAGGTATTCCTCCAGA 159472 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||| ||| | |||||||| || |||||||| || || | || ||| | | || || Sbjct 159471 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 159412 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| | || ||||| || || | ||| | ||| | ||||| |||||||| Sbjct 159411 TAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159361 Score = 118 bits (130), Expect = 1e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || | || || || || || ||| | || || || || Sbjct 150635 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAACCATC 150576 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| | || || ||||| || |||||||| || |||||||||||||| Sbjct 150575 GGATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 150516 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| ||||||| ||||| || || | || |||| || || | | || || || Sbjct 150515 ACAGCGTTTAATTTTCGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 150456 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGC 27619 | |||||||||||||| | ||| |||| |||| Sbjct 150455 CATACAAAAGGAATCCACATTGCATTTAGTATTGC 150421 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || || || || || ||| | || || ||| | Sbjct 159131 ATGCAAATTTTCGTCAAAACATTGACTGGTAAAACCATCACTTTAGAAGTCGAGCCTTCC 159072 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | |||||||||||||| || ||||| ||||| || ||||| || Sbjct 159071 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159012 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| || ||| | || || | || ||| | | || || ||| Sbjct 159011 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 158952 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | || | ||||| |||||||| Sbjct 158951 ATTCAGAAGGAGTCAACCTTGCATTTGGTTCTACGTCTGCGCGGTGG 158905 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || || ||| | || || || || Sbjct 150862 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACCATCACTTTGGAAGTAGAATCGTCG 150803 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||| || |||||||| || |||||||||||||| Sbjct 150802 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 150743 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| || || | || || | || || | | || || || Sbjct 150742 CAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAAC 150683 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || |||||||| | ||| | || |||||||| ||||||||| Sbjct 150682 ATACAGAAAGAATCCACATTGCATTTGGTATTGCGTCTCCGCGGTGGA 150635 Score = 113 bits (124), Expect = 5e-20 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||| || |||||||| || |||||||||||||| Sbjct 145932 GATACTATCGAAAACGTTAAAGCAAAAATCCAAGACAAGGAAGGTATTCCTCCAGACCAA 145873 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| ||||||| ||||| || ||| | || |||| || || | | || || || Sbjct 145872 CAGCGTTTAATTTTCGCTGGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAAC 145813 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||||||| |||||||| | || ||||||| ||||| || Sbjct 145812 ATACAAAAGGAATCTACTCTTCACTTGGTACTGCGTCTCCGCGGAGG 145766 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||| || | || |||||||| || || | || || ||| | Sbjct 159359 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCTTAGAAGTCGAGCCTTCC 159300 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || | |||||||||||||| || ||||| ||||| || ||||| || Sbjct 159299 GACACAATTGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 159240 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| || ||| | || || | || ||| | | || || ||| Sbjct 159239 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACCTTGTCCGATTACAAT 159180 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | ||| | ||||| |||||||| Sbjct 159179 ATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGG 159133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | |||||||||||||| || ||||| ||||| || ||||| || Sbjct 156645 GATACCATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAA 156586 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| | || |||||||| || ||| | || || | || || || | || || ||| Sbjct 156585 CAACGTTTGATCTTTGCTGGCAAACAATTGGAAGACGGACGCACTTTATCTGATTACAAT 156526 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || | ||| | ||| | ||| | |||||||| Sbjct 156525 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTTTGCGCGGTGG 156479 >seq161 Length=579164 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || ||||| ||||| ||||||||| | || |||||| | Sbjct 362451 AATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 362392 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| ||||||||||| || || || ||||||||||| || Sbjct 362391 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 362332 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | ||||| |||||||| ||| | || |||| || || || | || ||||| Sbjct 362331 ACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAA 362272 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | || | || | ||||| || ||||| Sbjct 362271 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGG 362224 >seq226 Length=508163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 ||||||||||| ||| | | || | || | ||||| |||||| | || || || || Sbjct 75454 GAGGTTGAGTCTTCTGACACCGTTAAATATATCAAGGCAAAAATTGAAGAAAAAGAAGGT 75395 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||||| ||| || ||| | | || |||| ||| |||||| | || || || ||||| Sbjct 75394 ATTCCTCTAGATCATCAGTGCTTGATATTTGATGGAAAGCAATTGGAAGACGACCGTACT 75335 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 || || |||||| | | || || | |||||||| | | |||||| | |||||| Sbjct 75334 CTCTTCGAATATAATATTGAGAAAGACGCTACTCTTCAGGTGATTTTGCGTTTGCGCGGT 75275 Query 27631 G 27631 | Sbjct 75274 G 75274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293326332400