Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq383 141 6e-29 seq565 118 7e-22 seq451 93.3 3e-14 seq161 93.3 3e-14 >seq383 Length=330124 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || | |||||| |||||||||||||| || |||||||| || ||||| ||||| Sbjct 43951 GCCTCCGCGAAGACGTAACACCAAATGGAGCGTAGATTCCTTTTGGATATTATAGTCTGA 43892 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | || || | ||||| || || ||||||||||| ||||| |||||||| || || || Sbjct 43891 CAAGGTGCGGCCATCTTCCAGCTGCTTACCGGCAAAAATTAAGCGCTGTTGATCTGGAGG 43832 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || || |||||| ||| ||||| ||||||| | ||| || || | || | Sbjct 43831 AATGCCTTCTTTGTCT-TGAATTTTTGCTTTAACGTTCTCAATAGTATCCGAGGGTTCTA 43773 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 |||| | || || |||||||| || || ||||| ||||| ||||||||| Sbjct 43772 CTTCTAAAGTGATGGTTTTACCTGTCAAAGTTTTTACAAAGATCTGCATG 43723 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||||| || ||||| | ||| ||| || || ||||||||||| ||||| || || | Sbjct 43711 ACGCAGGACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCC 43652 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || | ||| || || ||||| ||||||||||| || || ||||| | ||| ||||| Sbjct 43651 ATCCTCCAATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTT 43592 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| | |||||| | ||| ||||| ||| || || | || | Sbjct 43591 ATCT-TGAATTTTAGCTTTAACATTCTCAATAGTGTCAGACGGCTCAACCTCTAAAGTGA 43533 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||||| || || || || ||||| || |||||||| || Sbjct 43532 TAGTTTTGCCAGTCAATGTCTTCACGAAGATCTGCATTTT 43493 >seq565 Length=193464 Score = 118 bits (130), Expect = 7e-22 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| |||||||| | ||| || || || ||||| ||||| || | || || Sbjct 150645 AGACGCAATACCAAATGCAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGG 150704 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||||| || ||||| || |||||||||||||| || || | || ||| Sbjct 150705 CCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCC 150764 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666 |||||| ||| ||||| ||||||| | || || | | || | || ||||||| | Sbjct 150765 TTGTCTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGACGAT-TCTACTTCCAAAG 150822 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || ||||| || || || ||||| ||||| || |||||| Sbjct 150823 TGATGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATG 150863 Score = 113 bits (124), Expect = 3e-20 Identities = 158/217 (73%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 34493 GCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGT 34552 |||| || ||||| | ||| |||||||| ||||| ||||| || | ||| || | | Sbjct 150421 GCAATACTAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCAT 150480 Query 34553 CTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT 34612 |||| | ||||| || || || ||||||||||||||||| || || | || ||||||| Sbjct 150481 CTTCCAACTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGT 150540 Query 34613 CTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCCACTTCCACGGTTA 34669 || ||| ||||| ||||||| | || || || || | || ||||||| || | Sbjct 150541 CTTGGAT-TTTTGCTTTAACGTTTTCGATAGTATC--CGATGGTTCTACTTCCAAAGTGA 150597 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || || || ||||| ||||| || ||||| Sbjct 150598 TGGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 150634 Score = 109 bits (120), Expect = 3e-19 Identities = 112/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| || ||||| |||||||| ||||| ||||| || | ||| || Sbjct 145775 AGACGCAGTACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 145834 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | |||||| || || || ||||||||||||||||| || || | || ||| Sbjct 145835 CCATCTTCCAATTGTTTGCCAGCGAAAATTAAACGCTGTTGGTCTGGAGGAATACCTTCC 145894 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG 34633 |||||| ||| ||||| ||||||| Sbjct 145895 TTGTCTTGGAT-TTTTGCTTTAACG 145918 Score = 105 bits (116), Expect = 4e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| || ||||||||||| || || || |||||||| || || || ||||| || | Sbjct 150875 ACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCAGAGAGTGTGCGGCC 150934 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 | ||| | ||||| || ||||| || ||||| ||||| || || || || ||||| || Sbjct 150935 ATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACACCCTCTTT 150994 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| |||||||| | ||| || || ||| || |||| ||| | Sbjct 150995 ATCT-TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGA 151053 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||||| || || || || ||||| || |||||||| || Sbjct 151054 TAGTTTTTCCAGTCAATGTCTTCACGAAGATCTGCATTTT 151093 >seq451 Length=246926 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||||||| | ||| | ||| || |||||||| |||||||| || Sbjct 37769 CCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGAC 37828 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || || || || || ||||| || || Sbjct 37829 AATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 37888 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||||| | || ||||| | || || Sbjct 37889 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 37948 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || |||| ||||| |||||||||||||| ||| Sbjct 37949 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 37999 >seq161 Length=579164 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| || | || ||||||||| ||||||||||| || | || ||| Sbjct 362233 AGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGC 362292 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||||||| || || || ||||| ||||| || || || | || || Sbjct 362293 CCATCTTCCAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCT 362352 Query 34609 TTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| ||| | || || | ||| ||||| ||| ||||||| || Sbjct 362353 TTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGT 362411 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || ||||| || || | ||||| |||||||| ||||| || || Sbjct 362412 AATAGTTTTGCCAGTAAGAGTTTTAACAAAAATTTGCATTTTTAT 362456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314720413338035