Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20fuscipes_20fuscipes_20[genbank_20GCA_5F000671735.1_202014 -05-08] 2,395 sequences; 374,774,708 total letters Query= NC_028854.1 Length=43724 Score E Sequences producing significant alignments: (Bits) Value seq690 122 2e-23 seq477 122 2e-23 seq797 109 2e-19 seq961 89.7 1e-13 >seq690 Length=132870 Score = 122 bits (134), Expect = 2e-23 Identities = 284/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 20865 CCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATTGAGCTCCAATATTAGATGC 20924 |||||||| ||| |||| || ||||| || ||| | || ||||| ||| || Sbjct 126170 CCATGAATTCGAATATTGTTGTATCAATTAATAAAATTAAATAGTTCCAACTTTAATTGT 126111 Query 20925 TGTAAACTTTGAAAGTTCATCTAAC--TAATGAATTCGGTCTTCATAACTTTAAACGCAG 20982 | |||| ||| ||| || || | | |||| ||||| || || | | ||||| | | | Sbjct 126110 TCTAAATTTTTAAATTT--TCGACCATTAATAAATTCAGTTTTAAAAGCTTTATAGGTTG 126053 Query 20983 CTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTAAAGATCGACCAATCTGGA 21042 |||||| || |||||||| ||||| ||||||||| |||||| |||| ||| | | Sbjct 126052 TTTCAGCTACTGCGTTATCGTAAGGGCAACCTTTCGCACTTAATGATCTTTTAATATTAA 125993 Query 21043 ACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCACTGCCACGATCTGTATGAA 21102 | || | | || ||||| | ||||||||| |||||| | |||||||||||||||| Sbjct 125992 ATGTTAATAAAATTTCTTCAATAATTTTATTTTTAAATTCATTACCACGATCTGTATGAA 125933 Query 21103 AC-----AATTGAATTT-GTCGTAAGTCTCCTTGTACAGAGGAAAAGGCACGCGCGACTA 21156 || |||| ||||| || || || | || || |||| || || |||| Sbjct 125932 ACAACCTAATTTAATTTAGTGGT-CGTGTTATTTTA-----TAAAATGCCTGCTGAACTA 125879 Query 21157 GAGCTGCGTCCTTTTTCGGGCCTGCGCTGGAGCCAATGATCTCTCGATTGAAAAGATCAA 21216 | | || || || | || ||||| ||||||| | || || || || | ||||| Sbjct 125878 GTTCAGCAGTTTTATTTGTTCCAGCGCTATAGCCAATTACTTCACGGTTAAATAAATCAA 125819 Query 21217 CAAATATACAGATGTAGTGCCATCTATTTTTAACTTTGACATACGTTAGATCGCTTACAA 21276 | || || || || || ||| | ||||| ||||| |||| |||||| |||| Sbjct 125818 TTAGTAAGCAAATATAATGTCATTTTGAACCAACTTGAACATAGGTTAAATCGCTCACAA 125759 Query 21277 CAAC 21280 ||| Sbjct 125758 TAAC 125755 Score = 93.3 bits (102), Expect = 1e-14 Identities = 93/118 (79%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 21640 TTACTTTCGTCCCATGATCAGCGCTGCTTGCTTTAAAATATCGACTTCCAT-CTTAAGAC 21698 ||||||| || || ||||| |||||||||||||||||||| |||||| | ||| Sbjct 125389 TTACTTTTTGCCGATTATCAGTGCTGCTTGCTTTAAAATATCATTTTCCATTCGTAATTG 125330 Query 21699 GTTGATTTTCTTTTCGCAATGCAATAAGTTCATTCTCTTCTAGAGAACGATTATCCTT 21756 ||| |||||||||||||| |||||||||||| ||||| | ||| ||||| || || Sbjct 125329 TTTG-TTTTCTTTTCGCAACTGAATAAGTTCATTTTCTTCAACAGAGCGATTGTCTTT 125273 >seq477 Length=240241 Score = 122 bits (134), Expect = 2e-23 Identities = 284/424 (67%), Gaps = 16/424 (4%) Strand=Plus/Minus Query 20865 CCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATTGAGCTCCAATATTAGATGC 20924 |||||||| ||| |||| || ||||| ||| ||| | || ||||| ||| || Sbjct 56659 CCATGAATTCGAATATTGTTGTATCAATTAATGAAATTAAATAGTTCCAACTTTAATTGT 56600 Query 20925 TGTAAACTTTGAAAGTTCATCTAAC--TAATGAATTCGGTCTTCATAACTTTAAACGCAG 20982 | |||| ||| ||| || || | | |||| ||||| || || | | ||||| | | | Sbjct 56599 TCTAAATTTTTAAATTT--TCGACCATTAATAAATTCAGTTTTAAAAGCTTTATAGGTTG 56542 Query 20983 CTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTAAAGATCGACCAATCTGGA 21042 |||||| || |||||||| ||||| |||||||| |||||| |||| ||| | | Sbjct 56541 TTTCAGCTACTGCGTTATCGTAAGGGCAACCTTTTGCACTTAATGATCTTTTAATATTAA 56482 Query 21043 ACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCACTGCCACGATCTGTATGAA 21102 | || | | || ||||| | ||||||||| |||||| | |||||||||||||||| Sbjct 56481 ATGTTAATAAAATTTCTTCAATAATTTTATTTTTAAATTCATTACCACGATCTGTATGAA 56422 Query 21103 AC-----AATTGAATTT-GTCGTAAGTCTCCTTGTACAGAGGAAAAGGCACGCGCGACTA 21156 || |||| ||||| || || || | || || |||| || || |||| Sbjct 56421 ACAACCTAATTTAATTTAGTGGT-CGTGTTATTTTA-----TAAAATGCCTGCTGAACTA 56368 Query 21157 GAGCTGCGTCCTTTTTCGGGCCTGCGCTGGAGCCAATGATCTCTCGATTGAAAAGATCAA 21216 | | || || || | || ||||| ||||||| | || || || || | ||||| Sbjct 56367 GTTCAGCAGTTTTATTTGTTCCAGCGCTATAGCCAATTACTTCACGGTTAAATAAATCAA 56308 Query 21217 CAAATATACAGATGTAGTGCCATCTATTTTTAACTTTGACATACGTTAGATCGCTTACAA 21276 | || || || || || ||| | ||||| ||||| |||| |||||| |||| Sbjct 56307 TTAGTAAGCAAATATAATGTCATTTTGAACCAACTTGAACATAGGTTAAATCGCTCACAA 56248 Query 21277 CAAC 21280 ||| Sbjct 56247 TAAC 56244 Score = 122 bits (134), Expect = 2e-23 Identities = 180/253 (71%), Gaps = 4/253 (2%) Strand=Plus/Plus Query 20865 CCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATTGAGCTCCAATATTAGATGC 20924 |||||||| || |||| || ||||| ||| ||| | || ||||| ||| || Sbjct 137972 CCATGAATTCGGATATTGTTGTATCAATTAATGAAATTAAATAGTTCCAACTTTAATTGT 138031 Query 20925 TGTAAACTTTGAAAGTTCATCTAAC--TAATGAATTCGGTCTTCATAACTTTAAACGCAG 20982 | |||| ||| ||| || || | | |||| ||||| || || | | ||||| | || | Sbjct 138032 TCTAAATTTTTAAATTT--TCGACCATTAATAAATTCAGTTTTAAAAGCTTTATAGGCTG 138089 Query 20983 CTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTAAAGATCGACCAATCTGGA 21042 |||||| || |||||||| ||||| |||||||| |||||| |||| ||| | | Sbjct 138090 TTTCAGCTACTGCGTTATCGTAAGGGCAACCTTTTGCACTTAATGATCTTTTAATATTAA 138149 Query 21043 ACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCACTGCCACGATCTGTATGAA 21102 | || | | || ||||| | ||||||||| |||||| | |||||||||||||||| Sbjct 138150 ATGTTAATAAAATTTCTTCAATAATTTTATTTTTAAATTCATTACCACGATCTGTATGAA 138209 Query 21103 ACAATTGAATTTG 21115 |||| |||||| Sbjct 138210 ACAACCTAATTTG 138222 Score = 89.7 bits (98), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 21650 CCCATGATCAGCGCTGCTTGCTTTAAAATATCGACTTCCA-TCTTAAGACGTTGATTTTC 21708 || || ||||| |||||||||||||||||||| ||||| || ||| ||| ||||| Sbjct 222386 CCGATTATCAGTGCTGCTTGCTTTAAAATATCATTTTCCATTCGTAA-TTGTTTGTTTTC 222444 Query 21709 TTTTCGCAATGCAATAAGTTCATTCTCTTCTAGAGAACGATTATCCTTCTCAGAGAAGGA 21768 ||||||||| |||||||||||| ||||| | ||| ||||| || || | || || Sbjct 222445 TTTTCGCAACTGAATAAGTTCATTTTCTTCAACAGAGCGATTGTCTTTAGCTTTAAATGA 222504 Query 21769 TCCTGA 21774 |||||| Sbjct 222505 TCCTGA 222510 Score = 86.0 bits (94), Expect = 2e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 21650 CCCATGATCAGCGCTGCTTGCTTTAAAATATCGACTTCCAT-CTTAAGACGTTGATTTTC 21708 || || ||||| |||||||||||||||||||| |||||| | ||| ||| ||||| Sbjct 232796 CCTATTATCAGTGCTGCTTGCTTTAAAATATCATTTTCCATTCGTAATTGTTTG-TTTTC 232738 Query 21709 TTTTCGCAATGCAATAAGTTCATTCTCTTCTAGAGAACGATTATCCTTCTCAGAGAAGGA 21768 ||||||||| |||||||||||| ||||| | ||| | ||| || || | || || Sbjct 232737 TTTTCGCAACTGAATAAGTTCATTTTCTTCAACAGAGCAATTGTCTTTAGCTTTAAATGA 232678 Query 21769 TCCTGA 21774 |||||| Sbjct 232677 TCCTGA 232672 >seq797 Length=92859 Score = 109 bits (120), Expect = 2e-19 Identities = 178/253 (70%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 20865 CCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATTGAGCTCCAATATTAGATGC 20924 |||||||| ||| |||| || ||||| ||| ||| | || ||||| ||| || Sbjct 78251 CCATGAATTCGAATATTGTTGTATCAATTAATGAAATTAAATAGTTCCAACTTTAATTGT 78310 Query 20925 TGTAAACTTTGAAAGTTCATCTAAC--TAATGAATTCGGTCTTCATAACTTTAAACGCAG 20982 | |||| ||| ||| || || | | |||| ||||| || || | | |||| | | | Sbjct 78311 TCTAAATTTTTAAATTT--TCGACCATTAATAAATTCAGTTTTAAAAGCTTTTAG-GTTG 78367 Query 20983 CTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTAAAGATCGACCAATCTGGA 21042 |||||| || |||||||| ||||| |||||||| |||||| |||| ||| | | Sbjct 78368 TTTCAGCTACTGCGTTATCGTAAGGGCAACCTTTTGCACTTAATGATCTTTTAATATTAA 78427 Query 21043 ACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCACTGCCACGATCTGTATGAA 21102 | || | | || ||||| | ||||||||| |||||| | |||| ||||||||||| Sbjct 78428 ATGTTAATAAAATTTCTTCAATAATTTTATTTTTAAATTCATTACCACAATCTGTATGAA 78487 Query 21103 ACAATTGAATTTG 21115 |||| |||||| Sbjct 78488 ACAACCTAATTTG 78500 Score = 91.5 bits (100), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 20865 CCATGAATGCGATGCCTGTTATACCAATTTATGTAATCATTGAGCTCCAATATTAGATGC 20924 |||||||| ||| |||| || ||||| ||| ||| | || ||||| ||| || Sbjct 16344 CCATGAATTCGAATATTGTTGTATCAATTAATGAAATTAAATAGTTCCAACTTTAATTGT 16403 Query 20925 TGTAAACTTTGAAAGTTCATCTAAC--TAATGAATTCGGTCTTCATAACTTTAAACGCAG 20982 | |||| ||| ||| || || | | |||| ||||| || || | | ||||| | | | Sbjct 16404 TCTAAATTTTTAAATTT--TCGACCATTAATAAATTCAGTTTTAAAAGCTTTATAGGTTG 16461 Query 20983 CTTCAGCAACGGCGTTATCATAAGGACAACCTTTCATACTTAAAGATCGACCAATCTGGA 21042 |||||| || |||||||| ||||| |||||||| |||||| |||| ||| | | Sbjct 16462 TTTCAGCTACTGCGTTATCGTAAGGGCAACCTTTTGCACTTAATGATCTTTTAATATTAA 16521 Query 21043 ACGTAGCAAGCGTCTCATCAATCAATTTATTTTTGAATTCACTGCCACGATCTGTA 21098 | || | | || ||||| ||||||||| | || | || ||||||||||| Sbjct 16522 ATGTTAATAAAATTTCTTCAATATTTTTATTTTTAAGTTTATTGTCACGATCTGTA 16577 >seq961 Length=46984 Score = 89.7 bits (98), Expect = 1e-13 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 21650 CCCATGATCAGCGCTGCTTGCTTTAAAATATCGACTTCCAT-CTTAAGACGTTGATTTTC 21708 || || ||||| |||||||||||||||||||| |||||| | ||| ||| ||||| Sbjct 14168 CCGATTATCAGTGCTGCTTGCTTTAAAATATCATTTTCCATTCGTAATTGTTTG-TTTTC 14110 Query 21709 TTTTCGCAATGCAATAAGTTCATTCTCTTCTAGAGAACGATTATCCTTCTCAGAGAAGGA 21768 ||||||||| |||||||||||| ||||| | ||| ||||| || || | || || Sbjct 14109 TTTTCGCAACTGAATAAGTTCATTTTCTTCAACAGAGCGATTGTCTTTAGCTTTAAATGA 14050 Query 21769 TCCTGA 21774 |||||| Sbjct 14049 TCCTGA 14044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139791224137140